RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TDRD9Q8NDG6 1382 aaKnown RBP5.11□□□□□ -1.59
USH2A-202ENST00000366942 SYNE3Q6ZMZ3 975 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 DRC1Q96MC2 740 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 PHLDB1Q86UU1 1377 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 RBM42Q9BTD8 480 aaKnown RBP5.11□□□□□ -1.59
USH2A-202ENST00000366942 SPG7Q9UQ90 795 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 AKNAQ7Z591 1439 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 GOLGA6L6A8MZA4 724 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 SLC3A2P08195 630 aaKnown RBP5.11□□□□□ -1.59
USH2A-202ENST00000366942 WDR78Q5VTH9 848 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 SPRYD3Q8NCJ5 442 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 CDCA7Q9BWT1 371 aaPredicted RBP5.11□□□□□ -1.59
USH2A-202ENST00000366942 CARMIL1Q5VZK9 1371 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 CPLX2Q6PUV4 134 aaKnown RBP5.1□□□□□ -1.59
USH2A-202ENST00000366942 DHX37Q8IY37 1157 aaKnown RBP5.1□□□□□ -1.59
USH2A-202ENST00000366942 KIF3AQ9Y496 699 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 SENP3-EIF4A1A0A087X0R7 540 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 NUTM2FA1L443 756 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 EIF6P56537 245 aaKnown RBP5.1□□□□□ -1.59
USH2A-202ENST00000366942 MIER1Q8N108 512 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 PARP3Q9Y6F1 533 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 KIAA1211Q6ZU35 1233 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 MCCP23508 829 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 CCDC152Q4G0S7 254 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 COG6Q9Y2V7 657 aa5.1□□□□□ -1.59
USH2A-202ENST00000366942 SLF2Q8IX21 1173 aa5.09□□□□□ -1.59
USH2A-202ENST00000366942 OGFOD1Q8N543 542 aa5.09□□□□□ -1.59
USH2A-202ENST00000366942 CARD11Q9BXL7 1154 aa5.09□□□□□ -1.59
USH2A-202ENST00000366942 RRP7BPQ9NSQ0 103 aa5.09□□□□□ -1.59
USH2A-202ENST00000366942 HTATSF1O43719 755 aaKnown RBP5.09□□□□□ -1.59
USH2A-202ENST00000366942 IPO8O15397 1037 aaKnown RBP5.09□□□□□ -1.59
USH2A-202ENST00000366942 PLEKHO1Q53GL0 409 aaPredicted RBP5.09□□□□□ -1.59
USH2A-202ENST00000366942 SAMD1Q6SPF0 538 aaPredicted RBP5.09□□□□□ -1.59
USH2A-202ENST00000366942 FBXO41Q8TF61 875 aa5.09□□□□□ -1.59
USH2A-202ENST00000366942 CCDC47Q96A33 483 aaKnown RBP5.09□□□□□ -1.59
USH2A-202ENST00000366942 LRSAM1Q6UWE0 723 aa5.09□□□□□ -1.6
USH2A-202ENST00000366942 TRPC5Q9UL62 973 aaPredicted RBP5.09□□□□□ -1.6
USH2A-202ENST00000366942 ST5P78524 1137 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 SLC52A1Q9NWF4 448 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 NOL8Q76FK4 1167 aaKnown RBP5.08□□□□□ -1.6
USH2A-202ENST00000366942 SPC25Q9HBM1 224 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 SLC5A4Q9NY91 659 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 CCDC180Q9P1Z9 1646 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 CUX2O14529 1486 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 HMMRO75330 724 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 GLRX3O76003 335 aaKnown RBP5.08□□□□□ -1.6
USH2A-202ENST00000366942 DESP17661 470 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 RDXP35241 583 aaKnown RBP5.08□□□□□ -1.6
USH2A-202ENST00000366942 SOGA3Q5TF21 947 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 RPGRQ92834 1020 aaKnown RBP5.08□□□□□ -1.6
USH2A-202ENST00000366942 PPP2R3CQ969Q6 453 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 TFCP2L1Q9NZI6 479 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 STARD3NLO95772 234 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 ZSCAN29Q8IWY8 852 aaPredicted RBP5.08□□□□□ -1.6
USH2A-202ENST00000366942 KCNH5Q8NCM2 988 aa5.08□□□□□ -1.6
USH2A-202ENST00000366942 ZBTB33Q86T24 672 aa5.07□□□□□ -1.6
USH2A-202ENST00000366942 NLRP6P59044 892 aa5.07□□□□□ -1.6
USH2A-202ENST00000366942 CCDC87Q9NVE4 849 aa5.07□□□□□ -1.6
USH2A-202ENST00000366942 DHX57Q6P158 1386 aaKnown RBP5.07□□□□□ -1.6
USH2A-202ENST00000366942 BICDL1Q6ZP65 573 aa5.07□□□□□ -1.6
USH2A-202ENST00000366942 SPON1Q9HCB6 807 aa5.07□□□□□ -1.6
USH2A-202ENST00000366942 TNIKQ9UKE5 1360 aa5.07□□□□□ -1.6
USH2A-202ENST00000366942 EVC2Q86UK5 1308 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 CA8P35219 290 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 RFC4P35249 363 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 VSIG10Q8N0Z9 540 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 ZNF219Q9P2Y4 722 aaPredicted RBP5.06□□□□□ -1.6
USH2A-202ENST00000366942 NPHP3Q7Z494 1330 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 TRAF1Q13077 416 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 MAPK8IP2Q13387 824 aaPredicted RBP5.06□□□□□ -1.6
USH2A-202ENST00000366942 ZNF622Q969S3 477 aaKnown RBP eCLIP5.06□□□□□ -1.6
USH2A-202ENST00000366942 GPBP1L1Q9HC44 474 aaPredicted RBP5.06□□□□□ -1.6
USH2A-202ENST00000366942 TNNI2P48788 182 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 PPP4R3AQ6IN85 833 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 NOD1Q9Y239 953 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 GOLGA6L4A6NEF3 574 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 FAM200AQ8TCP9 573 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 FMN1Q68DA7 1419 aa5.06□□□□□ -1.6
USH2A-202ENST00000366942 ABTB2Q8N961 1025 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 SUPT20HQ8NEM7 779 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 TNPO1Q92973 898 aaKnown RBP5.05□□□□□ -1.6
USH2A-202ENST00000366942 ZNF287Q9HBT7 754 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 SCLT1Q96NL6 688 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 GOLGA6L22H0YM25 854 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 EYA3Q99504 573 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.05□□□□□ -1.6
USH2A-202ENST00000366942 E9PSI1 815 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 KIF4AO95239 1232 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 BIRC2Q13490 618 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 CCDC125Q86Z20 511 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 RBM28Q9NW13 759 aaKnown RBP5.05□□□□□ -1.6
USH2A-202ENST00000366942 ABT1Q9ULW3 272 aaKnown RBP5.05□□□□□ -1.6
USH2A-202ENST00000366942 ECE1P42892 770 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 SKIV2LQ15477 1246 aaKnown RBP5.05□□□□□ -1.6
USH2A-202ENST00000366942 EP400NLQ6ZTU2 488 aa5.05□□□□□ -1.6
USH2A-202ENST00000366942 DDX54Q8TDD1 881 aaKnown RBP5.05□□□□□ -1.6
USH2A-202ENST00000366942 TEX13AQ9BXU3 409 aaPredicted RBP5.05□□□□□ -1.6
USH2A-202ENST00000366942 HOXD10P28358 340 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 TNIP1Q15025 636 aa5.04□□□□□ -1.6
USH2A-202ENST00000366942 KDM2BQ8NHM5 1336 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms