RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 JCADQ9P266 1359 aa13.78□□□□□ -0.2
HMGB1P39-201ENST00000366304 PRDM15P57071 1507 aaPredicted RBP13.78□□□□□ -0.2
HMGB1P39-201ENST00000366304 CFAP65Q6ZU64 1925 aaKnown RBP13.78□□□□□ -0.2
HMGB1P39-201ENST00000366304 PHLPP1O60346 1717 aa13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 TSPY4P0CV99 314 aa13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 TSPY10P0CW01 314 aa13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 COL16A1Q07092 1604 aaPredicted RBP13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 SLAIN2Q9P270 581 aa13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 EIF2AK4Q9P2K8 1649 aaKnown RBP13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 MAST1Q9Y2H9 1570 aa13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 EID1Q9Y6B2 187 aa13.77□□□□□ -0.21
HMGB1P39-201ENST00000366304 ARHGAP31Q2M1Z3 1444 aa13.76□□□□□ -0.21
HMGB1P39-201ENST00000366304 LRRC9Q6ZRR7 1453 aa13.75□□□□□ -0.21
HMGB1P39-201ENST00000366304 NWD1Q149M9 1564 aa13.75□□□□□ -0.21
HMGB1P39-201ENST00000366304 IDI1Q13907 227 aa13.74□□□□□ -0.21
HMGB1P39-201ENST00000366304 NKTRP30414 1462 aaKnown RBP13.73□□□□□ -0.21
HMGB1P39-201ENST00000366304 EFCAB6Q5THR3 1501 aa13.72□□□□□ -0.21
HMGB1P39-201ENST00000366304 MSH6P52701 1360 aa13.71□□□□□ -0.21
HMGB1P39-201ENST00000366304 DUOX2Q9NRD8 1548 aa13.69□□□□□ -0.22
HMGB1P39-201ENST00000366304 SPATA31A6Q5VVP1 1343 aa13.69□□□□□ -0.22
HMGB1P39-201ENST00000366304 ZNF772Q68DY9 489 aaPredicted RBP13.69□□□□□ -0.22
HMGB1P39-201ENST00000366304 FGD6Q6ZV73 1430 aa13.68□□□□□ -0.22
HMGB1P39-201ENST00000366304 ATXN8OSP0DMR3 200 aa13.68□□□□□ -0.22
HMGB1P39-201ENST00000366304 KDM5AP29375 1690 aaKnown RBP13.67□□□□□ -0.22
HMGB1P39-201ENST00000366304 RXRBP28702 533 aa13.67□□□□□ -0.22
HMGB1P39-201ENST00000366304 MEX3CQ5U5Q3 659 aaKnown RBP13.67□□□□□ -0.22
HMGB1P39-201ENST00000366304 STAG3Q9UJ98 1225 aa13.67□□□□□ -0.22
HMGB1P39-201ENST00000366304 KIF15Q9NS87 1388 aa13.67□□□□□ -0.22
HMGB1P39-201ENST00000366304 POLA2Q14181 598 aa13.66□□□□□ -0.22
HMGB1P39-201ENST00000366304 CDK12Q9NYV4 1490 aaPredicted RBP13.66□□□□□ -0.22
HMGB1P39-201ENST00000366304 DIP2AQ14689 1571 aa13.66□□□□□ -0.22
HMGB1P39-201ENST00000366304 NOS1P29475 1434 aa13.65□□□□□ -0.22
HMGB1P39-201ENST00000366304 AHDC1Q5TGY3 1603 aaPredicted RBP13.65□□□□□ -0.22
HMGB1P39-201ENST00000366304 RRP7BPQ9NSQ0 103 aa13.65□□□□□ -0.22
HMGB1P39-201ENST00000366304 SHPRHQ149N8 1683 aa13.65□□□□□ -0.22
HMGB1P39-201ENST00000366304 RGS12O14924 1447 aa13.64□□□□□ -0.23
HMGB1P39-201ENST00000366304 ZFYVE9O95405 1425 aa13.64□□□□□ -0.23
HMGB1P39-201ENST00000366304 ADGRB3O60242 1522 aa13.64□□□□□ -0.23
HMGB1P39-201ENST00000366304 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
HMGB1P39-201ENST00000366304 ABCC5O15440 1437 aa13.64□□□□□ -0.23
HMGB1P39-201ENST00000366304 NUTM2BA6NNL0 878 aaPredicted RBP13.63□□□□□ -0.23
HMGB1P39-201ENST00000366304 NUTM2EB1AL46 878 aaPredicted RBP13.63□□□□□ -0.23
HMGB1P39-201ENST00000366304 NUTM2AQ8IVF1 878 aaPredicted RBP13.63□□□□□ -0.23
HMGB1P39-201ENST00000366304 LMTK2Q8IWU2 1503 aa13.63□□□□□ -0.23
HMGB1P39-201ENST00000366304 ERBINQ96RT1 1412 aa13.63□□□□□ -0.23
HMGB1P39-201ENST00000366304 AFF2P51816 1311 aa13.63□□□□□ -0.23
HMGB1P39-201ENST00000366304 CHD2O14647 1828 aaKnown RBP13.62□□□□□ -0.23
HMGB1P39-201ENST00000366304 PLEKHG1Q9ULL1 1385 aa13.61□□□□□ -0.23
HMGB1P39-201ENST00000366304 BRINP3Q76B58 766 aa13.61□□□□□ -0.23
HMGB1P39-201ENST00000366304 BCANQ96GW7 911 aa13.61□□□□□ -0.23
HMGB1P39-201ENST00000366304 MYOM3Q5VTT5 1437 aa13.6□□□□□ -0.23
HMGB1P39-201ENST00000366304 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.59□□□□□ -0.23
HMGB1P39-201ENST00000366304 ADAMTS13Q76LX8 1427 aa13.58□□□□□ -0.24
HMGB1P39-201ENST00000366304 RIMS2Q9UQ26 1411 aa13.58□□□□□ -0.24
HMGB1P39-201ENST00000366304 NCOA3Q9Y6Q9 1424 aa13.58□□□□□ -0.24
HMGB1P39-201ENST00000366304 C19orf44Q9H6X5 657 aa13.57□□□□□ -0.24
HMGB1P39-201ENST00000366304 TBX22Q9Y458 520 aa13.57□□□□□ -0.24
HMGB1P39-201ENST00000366304 SETBP1Q9Y6X0 1596 aa13.57□□□□□ -0.24
HMGB1P39-201ENST00000366304 KANK1Q14678 1352 aa13.57□□□□□ -0.24
HMGB1P39-201ENST00000366304 PTPRUQ92729 1446 aa13.56□□□□□ -0.24
HMGB1P39-201ENST00000366304 NUTM2DQ5VT03 806 aaPredicted RBP13.56□□□□□ -0.24
HMGB1P39-201ENST00000366304 CADPS2Q86UW7 1296 aa13.56□□□□□ -0.24
HMGB1P39-201ENST00000366304 DDX17Q92841 729 aaKnown RBP13.56□□□□□ -0.24
HMGB1P39-201ENST00000366304 QTRT2Q9H974 415 aaKnown RBP13.56□□□□□ -0.24
HMGB1P39-201ENST00000366304 CROCC2H7BZ55 1655 aa13.56□□□□□ -0.24
HMGB1P39-201ENST00000366304 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
HMGB1P39-201ENST00000366304 MYO5BQ9ULV0 1848 aa13.55□□□□□ -0.24
HMGB1P39-201ENST00000366304 SETD5Q9C0A6 1442 aa13.55□□□□□ -0.24
HMGB1P39-201ENST00000366304 ASXL1Q8IXJ9 1541 aa13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 TMEM131LA2VDJ0 1609 aa13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 ATF3P18847 181 aa13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 RBM6P78332 1123 aaKnown RBP13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 C8orf37Q96NL8 207 aa13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 SLC52A1Q9NWF4 448 aa13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 DAPK1P53355 1430 aa13.54□□□□□ -0.24
HMGB1P39-201ENST00000366304 CHIC2Q9UKJ5 165 aa13.53□□□□□ -0.24
HMGB1P39-201ENST00000366304 PPP1R15AO75807 674 aaPredicted RBP13.52□□□□□ -0.25
HMGB1P39-201ENST00000366304 GCC2Q8IWJ2 1684 aa13.51□□□□□ -0.25
HMGB1P39-201ENST00000366304 MST1RQ04912 1400 aa13.51□□□□□ -0.25
HMGB1P39-201ENST00000366304 PNPLA6Q8IY17 1366 aa13.51□□□□□ -0.25
HMGB1P39-201ENST00000366304 AMOTL2Q9Y2J4 779 aa13.5□□□□□ -0.25
HMGB1P39-201ENST00000366304 NHSL1Q5SYE7 1610 aa13.5□□□□□ -0.25
HMGB1P39-201ENST00000366304 VPS8Q8N3P4 1428 aa13.49□□□□□ -0.25
HMGB1P39-201ENST00000366304 PTPN23Q9H3S7 1636 aa13.49□□□□□ -0.25
HMGB1P39-201ENST00000366304 EP400Q96L91 3159 aa13.48□□□□□ -0.25
HMGB1P39-201ENST00000366304 ATAD2Q6PL18 1390 aa13.47□□□□□ -0.25
HMGB1P39-201ENST00000366304 PIK3R4Q99570 1358 aa13.47□□□□□ -0.25
HMGB1P39-201ENST00000366304 ADAMTS2O95450 1211 aa13.47□□□□□ -0.25
HMGB1P39-201ENST00000366304 RPRD2Q5VT52 1461 aaKnown RBP13.47□□□□□ -0.25
HMGB1P39-201ENST00000366304 DCCP43146 1447 aa13.47□□□□□ -0.25
HMGB1P39-201ENST00000366304 ANKRD30AQ9BXX3 1397 aa13.46□□□□□ -0.25
HMGB1P39-201ENST00000366304 LRRC59Q96AG4 307 aaKnown RBP13.46□□□□□ -0.25
HMGB1P39-201ENST00000366304 ZRANB1Q9UGI0 708 aa13.46□□□□□ -0.25
HMGB1P39-201ENST00000366304 TRPM2O94759 1503 aa13.45□□□□□ -0.26
HMGB1P39-201ENST00000366304 CHGAP10645 457 aaKnown RBP13.45□□□□□ -0.26
HMGB1P39-201ENST00000366304 NGLY1Q96IV0 654 aa13.45□□□□□ -0.26
HMGB1P39-201ENST00000366304 XRN1Q8IZH2 1706 aaKnown RBP13.44□□□□□ -0.26
HMGB1P39-201ENST00000366304 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.44□□□□□ -0.26
HMGB1P39-201ENST00000366304 UNC13BO14795 1591 aa13.44□□□□□ -0.26
HMGB1P39-201ENST00000366304 NRXN3Q9Y4C0 1643 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms