RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 CPLX1O14810 134 aa11.26□□□□□ -0.61
VPS13A-203ENST00000360280 CSB-PGBD3P0DP91 1061 aa11.26□□□□□ -0.61
VPS13A-203ENST00000360280 OLFM4Q6UX06 510 aa11.26□□□□□ -0.61
VPS13A-203ENST00000360280 NOL10Q9BSC4 688 aaKnown RBP11.26□□□□□ -0.61
VPS13A-203ENST00000360280 DHX8Q14562 1220 aaKnown RBP11.26□□□□□ -0.61
VPS13A-203ENST00000360280 PAK3O75914 559 aaPredicted RBP11.26□□□□□ -0.61
VPS13A-203ENST00000360280 LETM1O95202 739 aaPredicted RBP11.26□□□□□ -0.61
VPS13A-203ENST00000360280 TSPYL1Q9H0U9 437 aa11.26□□□□□ -0.61
VPS13A-203ENST00000360280 ANKRD18AQ8IVF6 992 aa11.26□□□□□ -0.61
VPS13A-203ENST00000360280 PLCD4Q9BRC7 762 aa11.26□□□□□ -0.61
VPS13A-203ENST00000360280 AXDND1Q5T1B0 1012 aaPredicted RBP11.25□□□□□ -0.61
VPS13A-203ENST00000360280 ERLIN2O94905 339 aa11.25□□□□□ -0.61
VPS13A-203ENST00000360280 HMGN5P82970 282 aaKnown RBP11.25□□□□□ -0.61
VPS13A-203ENST00000360280 NASPP49321 788 aaPredicted RBP11.25□□□□□ -0.61
VPS13A-203ENST00000360280 NUCB2P80303 420 aa11.25□□□□□ -0.61
VPS13A-203ENST00000360280 FANCIQ9NVI1 1328 aa11.25□□□□□ -0.61
VPS13A-203ENST00000360280 PDE4AP27815 886 aa11.25□□□□□ -0.61
VPS13A-203ENST00000360280 FOXD4L6Q3SYB3 417 aaPredicted RBP11.25□□□□□ -0.61
VPS13A-203ENST00000360280 FOXD4L3Q6VB84 417 aaPredicted RBP11.25□□□□□ -0.61
VPS13A-203ENST00000360280 HSPA5P11021 654 aaKnown RBP11.25□□□□□ -0.61
VPS13A-203ENST00000360280 CCDC73Q6ZRK6 1079 aa11.25□□□□□ -0.61
VPS13A-203ENST00000360280 KIF7Q2M1P5 1343 aa11.24□□□□□ -0.61
VPS13A-203ENST00000360280 CTDP1Q9Y5B0 961 aaPredicted RBP11.24□□□□□ -0.61
VPS13A-203ENST00000360280 SAFB2Q14151 953 aaKnown RBP eCLIP11.24□□□□□ -0.61
VPS13A-203ENST00000360280 ERICH2A1L162 156 aa11.24□□□□□ -0.61
VPS13A-203ENST00000360280 TRDNQ13061 729 aa11.24□□□□□ -0.61
VPS13A-203ENST00000360280 OFD1O75665 1012 aa11.24□□□□□ -0.61
VPS13A-203ENST00000360280 NLRP13Q86W25 1043 aa11.24□□□□□ -0.61
VPS13A-203ENST00000360280 SMARCE1Q969G3 411 aa11.23□□□□□ -0.61
VPS13A-203ENST00000360280 ANKRD45Q5TZF3 282 aa11.23□□□□□ -0.61
VPS13A-203ENST00000360280 TXLNBQ8N3L3 684 aa11.23□□□□□ -0.61
VPS13A-203ENST00000360280 SAFBQ15424 915 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS13A-203ENST00000360280 CLUAP1Q96AJ1 413 aa11.23□□□□□ -0.61
VPS13A-203ENST00000360280 BRMS1Q9HCU9 246 aa11.23□□□□□ -0.61
VPS13A-203ENST00000360280 CHMP5Q9NZZ3 219 aa11.23□□□□□ -0.61
VPS13A-203ENST00000360280 CT47B1P0C2W7 299 aaPredicted RBP11.22□□□□□ -0.61
VPS13A-203ENST00000360280 GTF2E1P29083 439 aaPredicted RBP11.22□□□□□ -0.61
VPS13A-203ENST00000360280 ZFYVE27Q5T4F4 411 aa11.22□□□□□ -0.61
VPS13A-203ENST00000360280 MRE11P49959 708 aa11.21□□□□□ -0.61
VPS13A-203ENST00000360280 EIF3JO75822 258 aaKnown RBP11.21□□□□□ -0.61
VPS13A-203ENST00000360280 EZRP15311 586 aaKnown RBP11.21□□□□□ -0.62
VPS13A-203ENST00000360280 SEPT7Q16181 437 aaKnown RBP11.21□□□□□ -0.62
VPS13A-203ENST00000360280 LUC7LQ9NQ29 371 aaKnown RBP11.21□□□□□ -0.62
VPS13A-203ENST00000360280 RABEP1Q15276 862 aa11.21□□□□□ -0.62
VPS13A-203ENST00000360280 ENOX2Q16206 610 aaKnown RBP11.21□□□□□ -0.62
VPS13A-203ENST00000360280 ANO2Q9NQ90 1003 aa11.21□□□□□ -0.62
VPS13A-203ENST00000360280 DEF6Q9H4E7 631 aa11.21□□□□□ -0.62
VPS13A-203ENST00000360280 SMC3Q9UQE7 1217 aa11.2□□□□□ -0.62
VPS13A-203ENST00000360280 FMN1Q68DA7 1419 aa11.2□□□□□ -0.62
VPS13A-203ENST00000360280 IQCEQ6IPM2 695 aa11.2□□□□□ -0.62
VPS13A-203ENST00000360280 R3HCC1Q9Y3T6 440 aaKnown RBP11.2□□□□□ -0.62
VPS13A-203ENST00000360280 XBP1P17861 261 aa11.2□□□□□ -0.62
VPS13A-203ENST00000360280 MYBBP1AQ9BQG0 1328 aaKnown RBP11.2□□□□□ -0.62
VPS13A-203ENST00000360280 ERCC6Q03468 1493 aa11.2□□□□□ -0.62
VPS13A-203ENST00000360280 ERLIN1O75477 346 aa11.2□□□□□ -0.62
VPS13A-203ENST00000360280 CAVIN1Q6NZI2 390 aaKnown RBP11.19□□□□□ -0.62
VPS13A-203ENST00000360280 DDX19BQ9UMR2 479 aa11.19□□□□□ -0.62
VPS13A-203ENST00000360280 PDILTQ8N807 584 aa11.19□□□□□ -0.62
VPS13A-203ENST00000360280 VPS37CA5D8V6 355 aaPredicted RBP11.19□□□□□ -0.62
VPS13A-203ENST00000360280 NEFHP12036 1026 aa11.19□□□□□ -0.62
VPS13A-203ENST00000360280 UACAQ9BZF9 1416 aa11.19□□□□□ -0.62
VPS13A-203ENST00000360280 E9PSI1 815 aa11.19□□□□□ -0.62
VPS13A-203ENST00000360280 PIP4K2AP48426 406 aaPredicted RBP11.19□□□□□ -0.62
VPS13A-203ENST00000360280 SYCP1Q15431 976 aa11.18□□□□□ -0.62
VPS13A-203ENST00000360280 INTS3Q68E01 1043 aaKnown RBP11.18□□□□□ -0.62
VPS13A-203ENST00000360280 ZBED9Q6R2W3 1325 aa11.18□□□□□ -0.62
VPS13A-203ENST00000360280 NINLQ9Y2I6 1382 aa11.18□□□□□ -0.62
VPS13A-203ENST00000360280 PODXL2Q9NZ53 605 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 ZKSCAN2Q63HK3 967 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 STK26Q9P289 416 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 VPS8Q8N3P4 1428 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 NFXL1Q6ZNB6 911 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 FILIP1LQ4L180 1135 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 RAD21O60216 631 aa11.17□□□□□ -0.62
VPS13A-203ENST00000360280 KINO60870 393 aaKnown RBP11.17□□□□□ -0.62
VPS13A-203ENST00000360280 DHX16O60231 1041 aaKnown RBP11.17□□□□□ -0.62
VPS13A-203ENST00000360280 C9orf78Q9NZ63 289 aaPredicted RBP11.16□□□□□ -0.62
VPS13A-203ENST00000360280 RRP1P56182 461 aaKnown RBP11.16□□□□□ -0.62
VPS13A-203ENST00000360280 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.16□□□□□ -0.62
VPS13A-203ENST00000360280 TRIM5Q9C035 493 aa11.16□□□□□ -0.62
VPS13A-203ENST00000360280 VPS37DQ86XT2 251 aa11.16□□□□□ -0.62
VPS13A-203ENST00000360280 MBD3O95983 291 aa11.15□□□□□ -0.62
VPS13A-203ENST00000360280 AMPHP49418 695 aa11.15□□□□□ -0.62
VPS13A-203ENST00000360280 AAMPQ13685 434 aa11.15□□□□□ -0.62
VPS13A-203ENST00000360280 IFIT2P09913 472 aaKnown RBP11.15□□□□□ -0.62
VPS13A-203ENST00000360280 CCDC18Q5T9S5 1454 aa11.15□□□□□ -0.62
VPS13A-203ENST00000360280 CLASRPQ8N2M8 674 aaKnown RBP11.15□□□□□ -0.63
VPS13A-203ENST00000360280 PSMA5P28066 241 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 GBP2P32456 591 aaPredicted RBP11.14□□□□□ -0.63
VPS13A-203ENST00000360280 MAGEC2Q9UBF1 373 aaPredicted RBP11.14□□□□□ -0.63
VPS13A-203ENST00000360280 ERC2O15083 957 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 PDCP20941 246 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 CCDC146Q8IYE0 955 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 SDF4Q9BRK5 362 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 ZNHIT6Q9NWK9 470 aaKnown RBP11.14□□□□□ -0.63
VPS13A-203ENST00000360280 PKD2Q13563 968 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 TXLNAP40222 546 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 ANKRD30AQ9BXX3 1397 aa11.14□□□□□ -0.63
VPS13A-203ENST00000360280 RALYLQ86SE5 291 aaKnown RBP11.14□□□□□ -0.63
VPS13A-203ENST00000360280 TTLL5Q6EMB2 1281 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms