RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CPLX2Q6PUV4 134 aaKnown RBP15.19■□□□□ 0.02
COL6A3-203ENST00000353578 DDX19BQ9UMR2 479 aa15.19■□□□□ 0.02
COL6A3-203ENST00000353578 SPAG9O60271 1321 aaKnown RBP15.19■□□□□ 0.02
COL6A3-203ENST00000353578 SMARCE1Q969G3 411 aa15.19■□□□□ 0.02
COL6A3-203ENST00000353578 ZBTB7CA1YPR0 619 aa15.19■□□□□ 0.02
COL6A3-203ENST00000353578 PRIMPOLQ96LW4 560 aa15.19■□□□□ 0.02
COL6A3-203ENST00000353578 KIAA1328Q86T90 577 aa15.18■□□□□ 0.02
COL6A3-203ENST00000353578 WWC1Q8IX03 1113 aa15.18■□□□□ 0.02
COL6A3-203ENST00000353578 GRPEL1Q9HAV7 217 aa15.18■□□□□ 0.02
COL6A3-203ENST00000353578 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.18■□□□□ 0.02
COL6A3-203ENST00000353578 POTEB2H3BUK9 544 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 ANKRD18AQ8IVF6 992 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 BRPF3Q9ULD4 1205 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 SHTN1A0MZ66 631 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 SPATA24Q86W54 205 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 RASSF8Q8NHQ8 419 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 ZMYND15Q9H091 742 aa15.17■□□□□ 0.02
COL6A3-203ENST00000353578 MORC1Q86VD1 984 aa15.16■□□□□ 0.02
COL6A3-203ENST00000353578 RRP7BPQ9NSQ0 103 aa15.16■□□□□ 0.02
COL6A3-203ENST00000353578 SMC4Q9NTJ3 1288 aa15.16■□□□□ 0.02
COL6A3-203ENST00000353578 TUBB4BP68371 445 aa15.16■□□□□ 0.02
COL6A3-203ENST00000353578 CCDC192P0DO97 292 aa15.15■□□□□ 0.02
COL6A3-203ENST00000353578 INTS3Q68E01 1043 aaKnown RBP15.15■□□□□ 0.02
COL6A3-203ENST00000353578 NEUROD2Q15784 382 aa15.15■□□□□ 0.02
COL6A3-203ENST00000353578 TRIM6-TRIM34B2RNG4 842 aa15.15■□□□□ 0.02
COL6A3-203ENST00000353578 KIF20AO95235 890 aa15.15■□□□□ 0.02
COL6A3-203ENST00000353578 NBPF1Q3BBV0 1214 aa15.15■□□□□ 0.02
COL6A3-203ENST00000353578 HSPA5P11021 654 aaKnown RBP15.15■□□□□ 0.02
COL6A3-203ENST00000353578 CNTLNQ9NXG0 1405 aa15.15■□□□□ 0.02
COL6A3-203ENST00000353578 OLFM4Q6UX06 510 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 CREBRFQ8IUR6 639 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 SLC26A8Q96RN1 970 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 STK31Q9BXU1 1019 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 RAB3GAP2Q9H2M9 1393 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 CLSTN1O94985 981 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 PLEKHH2Q8IVE3 1493 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 C22orf23Q9BZE7 217 aa15.14■□□□□ 0.01
COL6A3-203ENST00000353578 CLGNO14967 610 aa15.13■□□□□ 0.01
COL6A3-203ENST00000353578 NEMFO60524 1076 aa15.13■□□□□ 0.01
COL6A3-203ENST00000353578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.13■□□□□ 0.01
COL6A3-203ENST00000353578 RTF1Q92541 710 aaKnown RBP15.13■□□□□ 0.01
COL6A3-203ENST00000353578 EZRP15311 586 aaKnown RBP15.12■□□□□ 0.01
COL6A3-203ENST00000353578 CAVIN2O95810 425 aa15.12■□□□□ 0.01
COL6A3-203ENST00000353578 TUBB4AP04350 444 aa15.12■□□□□ 0.01
COL6A3-203ENST00000353578 ZKSCAN2Q63HK3 967 aa15.11■□□□□ 0.01
COL6A3-203ENST00000353578 FBLN2P98095 1184 aa15.11■□□□□ 0.01
COL6A3-203ENST00000353578 TRIM5Q9C035 493 aa15.11■□□□□ 0.01
COL6A3-203ENST00000353578 LRRCC1Q9C099 1032 aa15.11■□□□□ 0.01
COL6A3-203ENST00000353578 HS1BP3Q53T59 392 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 PAIP2Q9BPZ3 127 aaKnown RBP15.1■□□□□ 0.01
COL6A3-203ENST00000353578 CBFA2T2O43439 604 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 CCDC91Q7Z6B0 441 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.1■□□□□ 0.01
COL6A3-203ENST00000353578 BICD2Q8TD16 824 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 KIF3BO15066 747 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 FILIP1Q7Z7B0 1213 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 TMCO3Q6UWJ1 677 aa15.1■□□□□ 0.01
COL6A3-203ENST00000353578 SCAPERQ9BY12 1400 aa15.09■□□□□ 0.01
COL6A3-203ENST00000353578 KINO60870 393 aaKnown RBP15.09■□□□□ 0.01
COL6A3-203ENST00000353578 SH3BGRP55822 239 aaPredicted RBP15.08■□□□□ 0.01
COL6A3-203ENST00000353578 NACADO15069 1562 aa15.08■□□□□ 0
COL6A3-203ENST00000353578 PPP1R15AO75807 674 aaPredicted RBP15.08■□□□□ 0
COL6A3-203ENST00000353578 CFDP1Q9UEE9 299 aaPredicted RBP15.08■□□□□ 0
COL6A3-203ENST00000353578 NF2P35240 595 aa15.08■□□□□ 0
COL6A3-203ENST00000353578 BBXQ8WY36 941 aaPredicted RBP15.08■□□□□ 0
COL6A3-203ENST00000353578 PLEKHH1Q9ULM0 1364 aa15.08■□□□□ 0
COL6A3-203ENST00000353578 GTF2A1P52655 376 aaPredicted RBP15.08■□□□□ 0
COL6A3-203ENST00000353578 UACAQ9BZF9 1416 aa15.08■□□□□ 0
COL6A3-203ENST00000353578 SWAP70Q9UH65 585 aa15.08■□□□□ 0
COL6A3-203ENST00000353578 MCTP1Q6DN14 999 aa15.07■□□□□ 0
COL6A3-203ENST00000353578 TRIM29Q14134 588 aa15.07■□□□□ 0
COL6A3-203ENST00000353578 SMAP1Q8IYB5 467 aaPredicted RBP15.07■□□□□ 0
COL6A3-203ENST00000353578 CUX1P39880 1505 aa15.06■□□□□ 0
COL6A3-203ENST00000353578 BRD4O60885 1362 aaPredicted RBP15.06■□□□□ 0
COL6A3-203ENST00000353578 DACH1Q9UI36 760 aa15.06■□□□□ 0
COL6A3-203ENST00000353578 CLCN1P35523 988 aa15.05■□□□□ 0
COL6A3-203ENST00000353578 CPSF2Q9P2I0 782 aaKnown RBP15.05■□□□□ 0
COL6A3-203ENST00000353578 CCDC146Q8IYE0 955 aa15.05■□□□□ 0
COL6A3-203ENST00000353578 KIF18AQ8NI77 898 aa15.05■□□□□ 0
COL6A3-203ENST00000353578 SMC3Q9UQE7 1217 aa15.05■□□□□ 0
COL6A3-203ENST00000353578 PAXBP1Q9Y5B6 917 aa15.05■□□□□ -0
COL6A3-203ENST00000353578 V9GYY5 206 aaPredicted RBP15.05■□□□□ -0
COL6A3-203ENST00000353578 UBXN4Q92575 508 aa15.05■□□□□ -0
COL6A3-203ENST00000353578 GOLGA6L9A6NEM1 432 aa15.05■□□□□ -0
COL6A3-203ENST00000353578 C11orf95C9JLR9 678 aaPredicted RBP15.05■□□□□ -0
COL6A3-203ENST00000353578 JMYQ8N9B5 988 aa15.04■□□□□ -0
COL6A3-203ENST00000353578 AKAP17AQ02040 695 aaKnown RBP15.04■□□□□ -0
COL6A3-203ENST00000353578 CHMP3Q9Y3E7 222 aa15.04■□□□□ -0
COL6A3-203ENST00000353578 FILIP1LQ4L180 1135 aa15.04■□□□□ -0
COL6A3-203ENST00000353578 PSMA5P28066 241 aa15.04■□□□□ -0
COL6A3-203ENST00000353578 KRT222Q8N1A0 295 aa15.03■□□□□ -0
COL6A3-203ENST00000353578 PLEKHD1A6NEE1 506 aa15.03■□□□□ -0
COL6A3-203ENST00000353578 HOMEZQ8IX15 550 aa15.03■□□□□ -0
COL6A3-203ENST00000353578 RBM33Q96EV2 1170 aaKnown RBP15.03■□□□□ -0
COL6A3-203ENST00000353578 CDC45O75419 566 aa15.03■□□□□ -0
COL6A3-203ENST00000353578 ZNHIT6Q9NWK9 470 aaKnown RBP15.03■□□□□ -0
COL6A3-203ENST00000353578 JAKMIP3Q5VZ66 844 aa15.03■□□□□ -0
COL6A3-203ENST00000353578 WDR66Q8TBY9 1149 aa15.02■□□□□ -0
COL6A3-203ENST00000353578 PRKRIP1Q9H875 184 aaPredicted RBP15.02■□□□□ -0
COL6A3-203ENST00000353578 LIG1P18858 919 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms