RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TRPM2O94759 1503 aa12.99□□□□□ -0.33
USP4-202ENST00000351842 PREX1Q8TCU6 1659 aa12.99□□□□□ -0.33
USP4-202ENST00000351842 C3P01024 1663 aa12.99□□□□□ -0.33
USP4-202ENST00000351842 LMTK2Q8IWU2 1503 aa12.98□□□□□ -0.33
USP4-202ENST00000351842 ARHGAP31Q2M1Z3 1444 aa12.97□□□□□ -0.33
USP4-202ENST00000351842 HSPA5P11021 654 aaKnown RBP12.97□□□□□ -0.33
USP4-202ENST00000351842 SPATA31E1Q6ZUB1 1445 aa12.96□□□□□ -0.33
USP4-202ENST00000351842 ST20-MTHFSA0A0A6YYL1 179 aa12.96□□□□□ -0.34
USP4-202ENST00000351842 MYO5BQ9ULV0 1848 aa12.95□□□□□ -0.34
USP4-202ENST00000351842 RIMS2Q9UQ26 1411 aa12.95□□□□□ -0.34
USP4-202ENST00000351842 ANKLE2Q86XL3 938 aa12.95□□□□□ -0.34
USP4-202ENST00000351842 UHRF1BP1Q6BDS2 1440 aa12.95□□□□□ -0.34
USP4-202ENST00000351842 PIK3C2BO00750 1634 aa12.95□□□□□ -0.34
USP4-202ENST00000351842 EIF4G2P78344 907 aaKnown RBP eCLIP12.94□□□□□ -0.34
USP4-202ENST00000351842 C14orf37Q86TY3 774 aa12.94□□□□□ -0.34
USP4-202ENST00000351842 ZC3H13Q5T200 1668 aaKnown RBP12.94□□□□□ -0.34
USP4-202ENST00000351842 PLEKHG5O94827 1062 aa12.94□□□□□ -0.34
USP4-202ENST00000351842 KIF1BO60333 1816 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 MROH2AA6NES4 1674 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 POGKQ9P215 609 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 A2ML1A8K2U0 1454 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 WAPLQ7Z5K2 1190 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 TIMELESSQ9UNS1 1208 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 ADAMTSL3P82987 1691 aa12.93□□□□□ -0.34
USP4-202ENST00000351842 HDGFP51858 240 aaKnown RBP12.92□□□□□ -0.34
USP4-202ENST00000351842 TMEM2Q9UHN6 1383 aa12.92□□□□□ -0.34
USP4-202ENST00000351842 DDX10Q13206 875 aaKnown RBP12.91□□□□□ -0.34
USP4-202ENST00000351842 MINK1Q8N4C8 1332 aaPredicted RBP12.91□□□□□ -0.34
USP4-202ENST00000351842 ZNF316A6NFI3 1004 aaPredicted RBP12.9□□□□□ -0.34
USP4-202ENST00000351842 SPATA31D1Q6ZQQ2 1576 aa12.9□□□□□ -0.34
USP4-202ENST00000351842 PRAG1Q86YV5 1406 aa12.9□□□□□ -0.34
USP4-202ENST00000351842 USP47Q96K76 1375 aa12.9□□□□□ -0.34
USP4-202ENST00000351842 SETD1BQ9UPS6 1966 aaKnown RBP12.9□□□□□ -0.34
USP4-202ENST00000351842 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.9□□□□□ -0.34
USP4-202ENST00000351842 PRAM1Q96QH2 718 aa12.88□□□□□ -0.35
USP4-202ENST00000351842 ADGRB3O60242 1522 aa12.87□□□□□ -0.35
USP4-202ENST00000351842 RPGRIP1LQ68CZ1 1315 aa12.87□□□□□ -0.35
USP4-202ENST00000351842 TMC1Q8TDI8 760 aa12.86□□□□□ -0.35
USP4-202ENST00000351842 C14orf93Q9H972 538 aaKnown RBP12.86□□□□□ -0.35
USP4-202ENST00000351842 METP08581 1390 aa12.86□□□□□ -0.35
USP4-202ENST00000351842 NLRP1Q9C000 1473 aa12.86□□□□□ -0.35
USP4-202ENST00000351842 TMEM131LA2VDJ0 1609 aa12.86□□□□□ -0.35
USP4-202ENST00000351842 C11orf95C9JLR9 678 aaPredicted RBP12.86□□□□□ -0.35
USP4-202ENST00000351842 AMOTL2Q9Y2J4 779 aa12.86□□□□□ -0.35
USP4-202ENST00000351842 CEP170BQ9Y4F5 1589 aaPredicted RBP12.86□□□□□ -0.35
USP4-202ENST00000351842 MYO3AQ8NEV4 1616 aa12.85□□□□□ -0.35
USP4-202ENST00000351842 KCNA6P17658 529 aa12.84□□□□□ -0.35
USP4-202ENST00000351842 SRPK2P78362 688 aaKnown RBP12.84□□□□□ -0.35
USP4-202ENST00000351842 NEXMIFQ5QGS0 1516 aa12.83□□□□□ -0.36
USP4-202ENST00000351842 CABP2Q9NPB3 220 aa12.82□□□□□ -0.36
USP4-202ENST00000351842 SCAF11Q99590 1463 aaKnown RBP12.82□□□□□ -0.36
USP4-202ENST00000351842 UBR1Q8IWV7 1749 aa12.81□□□□□ -0.36
USP4-202ENST00000351842 PLEKHH1Q9ULM0 1364 aa12.81□□□□□ -0.36
USP4-202ENST00000351842 ZNF335Q9H4Z2 1342 aaPredicted RBP12.81□□□□□ -0.36
USP4-202ENST00000351842 PIK3C2GO75747 1445 aa12.81□□□□□ -0.36
USP4-202ENST00000351842 CENPJQ9HC77 1338 aaPredicted RBP12.8□□□□□ -0.36
USP4-202ENST00000351842 PROSER2Q86WR7 435 aaPredicted RBP12.8□□□□□ -0.36
USP4-202ENST00000351842 ZFYVE9O95405 1425 aa12.8□□□□□ -0.36
USP4-202ENST00000351842 SCAF1Q9H7N4 1312 aaKnown RBP12.79□□□□□ -0.36
USP4-202ENST00000351842 DIEXFQ68CQ4 756 aaKnown RBP12.79□□□□□ -0.36
USP4-202ENST00000351842 RALGAPBQ86X10 1494 aa12.77□□□□□ -0.36
USP4-202ENST00000351842 WASHC2AQ641Q2 1341 aa12.77□□□□□ -0.37
USP4-202ENST00000351842 LMTK3Q96Q04 1460 aa12.77□□□□□ -0.37
USP4-202ENST00000351842 PPLO60437 1756 aa12.77□□□□□ -0.37
USP4-202ENST00000351842 NPHP4O75161 1426 aaPredicted RBP12.77□□□□□ -0.37
USP4-202ENST00000351842 YTHDC2Q9H6S0 1430 aaKnown RBP12.76□□□□□ -0.37
USP4-202ENST00000351842 TMF1P82094 1093 aa12.76□□□□□ -0.37
USP4-202ENST00000351842 PLEKHG1Q9ULL1 1385 aa12.76□□□□□ -0.37
USP4-202ENST00000351842 KIF7Q2M1P5 1343 aa12.76□□□□□ -0.37
USP4-202ENST00000351842 DISP3Q9P2K9 1392 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 PMFBP1Q8TBY8 1022 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 STAC3Q96MF2 364 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 ALKQ9UM73 1620 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 ROBO2Q9HCK4 1378 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 TBX22Q9Y458 520 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 ADAMTS13Q76LX8 1427 aa12.75□□□□□ -0.37
USP4-202ENST00000351842 MYOM2P54296 1465 aa12.74□□□□□ -0.37
USP4-202ENST00000351842 XPCQ01831 940 aaPredicted RBP12.74□□□□□ -0.37
USP4-202ENST00000351842 SOX12O15370 315 aa12.74□□□□□ -0.37
USP4-202ENST00000351842 SLC12A5Q9H2X9 1139 aa12.74□□□□□ -0.37
USP4-202ENST00000351842 TESK2Q96S53 571 aa12.73□□□□□ -0.37
USP4-202ENST00000351842 EIF3AQ14152 1382 aaKnown RBP12.73□□□□□ -0.37
USP4-202ENST00000351842 TNNT2P45379 298 aaPredicted RBP12.73□□□□□ -0.37
USP4-202ENST00000351842 LMOD2Q6P5Q4 547 aa12.73□□□□□ -0.37
USP4-202ENST00000351842 CDK19Q9BWU1 502 aa12.73□□□□□ -0.37
USP4-202ENST00000351842 TRPM1Q7Z4N2 1603 aa12.73□□□□□ -0.37
USP4-202ENST00000351842 IQGAP1P46940 1657 aa12.72□□□□□ -0.37
USP4-202ENST00000351842 SENP3-EIF4A1A0A087X0R7 540 aa12.72□□□□□ -0.37
USP4-202ENST00000351842 PTPRUQ92729 1446 aa12.72□□□□□ -0.37
USP4-202ENST00000351842 CC2D1BQ5T0F9 858 aaKnown RBP12.71□□□□□ -0.37
USP4-202ENST00000351842 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP4-202ENST00000351842 DDX17Q92841 729 aaKnown RBP12.69□□□□□ -0.38
USP4-202ENST00000351842 ASXL1Q8IXJ9 1541 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 ARHGAP23Q9P227 1491 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 PIP4K2BP78356 416 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 CABP1Q9NZU7 370 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 SLIT1O75093 1534 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 IFT172Q9UG01 1749 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 EVC2Q86UK5 1308 aa12.69□□□□□ -0.38
USP4-202ENST00000351842 PAK3O75914 559 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms