RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 CHMP4AQ9BY43 222 aa18.57■□□□□ 0.56
NUP50-201ENST00000347635 CD109Q6YHK3 1445 aa18.57■□□□□ 0.56
NUP50-201ENST00000347635 BACH2Q9BYV9 841 aa18.57■□□□□ 0.56
NUP50-201ENST00000347635 POGZQ7Z3K3 1410 aa18.56■□□□□ 0.56
NUP50-201ENST00000347635 RPRD2Q5VT52 1461 aaKnown RBP18.56■□□□□ 0.56
NUP50-201ENST00000347635 NFKBIBQ15653 356 aa18.55■□□□□ 0.56
NUP50-201ENST00000347635 RTF1Q92541 710 aaKnown RBP18.55■□□□□ 0.56
NUP50-201ENST00000347635 ABCC5O15440 1437 aa18.55■□□□□ 0.56
NUP50-201ENST00000347635 ADAMTS12P58397 1594 aa18.54■□□□□ 0.56
NUP50-201ENST00000347635 SLC52A1Q9NWF4 448 aa18.53■□□□□ 0.56
NUP50-201ENST00000347635 ARHGEF11O15085 1522 aa18.53■□□□□ 0.56
NUP50-201ENST00000347635 KIF21AQ7Z4S6 1674 aa18.53■□□□□ 0.56
NUP50-201ENST00000347635 BCL2L13Q9BXK5 485 aa18.52■□□□□ 0.56
NUP50-201ENST00000347635 NBPF1Q3BBV0 1214 aa18.52■□□□□ 0.56
NUP50-201ENST00000347635 SOX12O15370 315 aa18.51■□□□□ 0.55
NUP50-201ENST00000347635 MSNP26038 577 aaKnown RBP18.51■□□□□ 0.55
NUP50-201ENST00000347635 PPP2R1AP30153 589 aa18.5■□□□□ 0.55
NUP50-201ENST00000347635 UGGT2Q9NYU1 1516 aa18.5■□□□□ 0.55
NUP50-201ENST00000347635 ZKSCAN2Q63HK3 967 aa18.49■□□□□ 0.55
NUP50-201ENST00000347635 CAMSAP2Q08AD1 1489 aa18.49■□□□□ 0.55
NUP50-201ENST00000347635 DNTTIP2Q5QJE6 756 aaKnown RBP18.48■□□□□ 0.55
NUP50-201ENST00000347635 RPGRIP1LQ68CZ1 1315 aa18.47■□□□□ 0.55
NUP50-201ENST00000347635 DDX11L8A8MPP1 907 aa18.47■□□□□ 0.55
NUP50-201ENST00000347635 RSPH6AQ9H0K4 717 aa18.47■□□□□ 0.55
NUP50-201ENST00000347635 ERBINQ96RT1 1412 aa18.46■□□□□ 0.55
NUP50-201ENST00000347635 ADGRL1O94910 1474 aa18.46■□□□□ 0.55
NUP50-201ENST00000347635 RAPGEF3O95398 923 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 CSB-PGBD3P0DP91 1061 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 RAPGEF6Q8TEU7 1601 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 LMOD3Q0VAK6 560 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 RUNDC1Q96C34 613 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 CTTNBP2Q8WZ74 1663 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 TPRNQ4KMQ1 711 aa18.45■□□□□ 0.54
NUP50-201ENST00000347635 EIF4G3O43432 1585 aaKnown RBP18.44■□□□□ 0.54
NUP50-201ENST00000347635 AAMPQ13685 434 aa18.44■□□□□ 0.54
NUP50-201ENST00000347635 MCCP23508 829 aa18.43■□□□□ 0.54
NUP50-201ENST00000347635 THEMISQ8N1K5 641 aaPredicted RBP18.43■□□□□ 0.54
NUP50-201ENST00000347635 PANK1Q8TE04 598 aa18.43■□□□□ 0.54
NUP50-201ENST00000347635 COG3Q96JB2 828 aa18.43■□□□□ 0.54
NUP50-201ENST00000347635 AMPHP49418 695 aa18.42■□□□□ 0.54
NUP50-201ENST00000347635 MINK1Q8N4C8 1332 aaPredicted RBP18.42■□□□□ 0.54
NUP50-201ENST00000347635 PPP6R1Q9UPN7 881 aa18.42■□□□□ 0.54
NUP50-201ENST00000347635 APBB1O00213 710 aa18.4■□□□□ 0.54
NUP50-201ENST00000347635 DZIP1LQ8IYY4 767 aaKnown RBP18.4■□□□□ 0.54
NUP50-201ENST00000347635 DDX19BQ9UMR2 479 aa18.4■□□□□ 0.54
NUP50-201ENST00000347635 FOXD4L1Q9NU39 408 aa18.39■□□□□ 0.54
NUP50-201ENST00000347635 NUP160Q12769 1436 aa18.39■□□□□ 0.53
NUP50-201ENST00000347635 DENND4BO75064 1496 aaPredicted RBP18.39■□□□□ 0.53
NUP50-201ENST00000347635 TCOF1Q13428 1488 aaKnown RBP18.38■□□□□ 0.53
NUP50-201ENST00000347635 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.38■□□□□ 0.53
NUP50-201ENST00000347635 IL27Q8NEV9 243 aa18.38■□□□□ 0.53
NUP50-201ENST00000347635 KIAA0556O60303 1618 aa18.38■□□□□ 0.53
NUP50-201ENST00000347635 FANCAO15360 1455 aa18.37■□□□□ 0.53
NUP50-201ENST00000347635 ATP10BO94823 1461 aa18.37■□□□□ 0.53
NUP50-201ENST00000347635 CHMP5Q9NZZ3 219 aa18.37■□□□□ 0.53
NUP50-201ENST00000347635 PDE3AQ14432 1141 aa18.36■□□□□ 0.53
NUP50-201ENST00000347635 FRAT2O75474 233 aaPredicted RBP18.36■□□□□ 0.53
NUP50-201ENST00000347635 PLCB2Q00722 1185 aa18.36■□□□□ 0.53
NUP50-201ENST00000347635 TXNDC2Q86VQ3 553 aa18.36■□□□□ 0.53
NUP50-201ENST00000347635 BRPF3Q9ULD4 1205 aa18.35■□□□□ 0.53
NUP50-201ENST00000347635 BCAR3O75815 825 aa18.35■□□□□ 0.53
NUP50-201ENST00000347635 SKOR2Q2VWA4 1001 aaPredicted RBP18.34■□□□□ 0.53
NUP50-201ENST00000347635 ANKRD45Q5TZF3 282 aa18.34■□□□□ 0.53
NUP50-201ENST00000347635 ABCA5Q8WWZ7 1642 aa18.34■□□□□ 0.53
NUP50-201ENST00000347635 PLCH2O75038 1416 aa18.34■□□□□ 0.53
NUP50-201ENST00000347635 NINLQ9Y2I6 1382 aa18.33■□□□□ 0.53
NUP50-201ENST00000347635 TEX14Q8IWB6 1497 aa18.33■□□□□ 0.53
NUP50-201ENST00000347635 NUTM2FA1L443 756 aa18.33■□□□□ 0.52
NUP50-201ENST00000347635 OS9Q13438 667 aaPredicted RBP18.33■□□□□ 0.52
NUP50-201ENST00000347635 NUP153P49790 1475 aaKnown RBP18.33■□□□□ 0.52
NUP50-201ENST00000347635 GPATCH8Q9UKJ3 1502 aaKnown RBP18.32■□□□□ 0.52
NUP50-201ENST00000347635 C22orf23Q9BZE7 217 aa18.32■□□□□ 0.52
NUP50-201ENST00000347635 ASXL2Q76L83 1435 aa18.31■□□□□ 0.52
NUP50-201ENST00000347635 PBRM1Q86U86 1689 aa18.31■□□□□ 0.52
NUP50-201ENST00000347635 CFAP70Q5T0N1 1121 aa18.3■□□□□ 0.52
NUP50-201ENST00000347635 TCP11L2Q8N4U5 519 aa18.3■□□□□ 0.52
NUP50-201ENST00000347635 HDAC5Q9UQL6 1122 aa18.3■□□□□ 0.52
NUP50-201ENST00000347635 ATF3P18847 181 aa18.3■□□□□ 0.52
NUP50-201ENST00000347635 WDR7Q9Y4E6 1490 aa18.29■□□□□ 0.52
NUP50-201ENST00000347635 SLFN5Q08AF3 891 aa18.29■□□□□ 0.52
NUP50-201ENST00000347635 ITSN2Q9NZM3 1697 aa18.29■□□□□ 0.52
NUP50-201ENST00000347635 RALGAPBQ86X10 1494 aa18.29■□□□□ 0.52
NUP50-201ENST00000347635 HMMRO75330 724 aa18.29■□□□□ 0.52
NUP50-201ENST00000347635 ST18O60284 1047 aa18.28■□□□□ 0.52
NUP50-201ENST00000347635 PSME1Q06323 249 aa18.28■□□□□ 0.52
NUP50-201ENST00000347635 RIPK4P57078 832 aa18.28■□□□□ 0.52
NUP50-201ENST00000347635 C20orf194Q5TEA3 1177 aa18.28■□□□□ 0.52
NUP50-201ENST00000347635 PDZRN3Q9UPQ7 1066 aa18.28■□□□□ 0.52
NUP50-201ENST00000347635 KIF16BQ96L93 1317 aa18.28■□□□□ 0.52
NUP50-201ENST00000347635 NPHP1O15259 732 aa18.27■□□□□ 0.52
NUP50-201ENST00000347635 SYAP1Q96A49 352 aaPredicted RBP18.27■□□□□ 0.52
NUP50-201ENST00000347635 DHX29Q7Z478 1369 aaKnown RBP18.27■□□□□ 0.52
NUP50-201ENST00000347635 STK31Q9BXU1 1019 aa18.27■□□□□ 0.52
NUP50-201ENST00000347635 DIAPH1O60610 1272 aaKnown RBP18.27■□□□□ 0.52
NUP50-201ENST00000347635 KCNJ4P48050 445 aa18.26■□□□□ 0.51
NUP50-201ENST00000347635 ANKLE2Q86XL3 938 aa18.26■□□□□ 0.51
NUP50-201ENST00000347635 SKAP1Q86WV1 359 aa18.26■□□□□ 0.51
NUP50-201ENST00000347635 DDX49Q9Y6V7 483 aaKnown RBP18.26■□□□□ 0.51
NUP50-201ENST00000347635 MTHFSP49914 203 aa18.26■□□□□ 0.51
NUP50-201ENST00000347635 TMEM132EQ6IEE7 984 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms