RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 CHGAP10645 457 aaKnown RBP17.35■□□□□ 0.37
SNCA-202ENST00000345009 PTPRTO14522 1441 aa17.35■□□□□ 0.37
SNCA-202ENST00000345009 MYO3AQ8NEV4 1616 aa17.34■□□□□ 0.37
SNCA-202ENST00000345009 CEP170BQ9Y4F5 1589 aaPredicted RBP17.34■□□□□ 0.37
SNCA-202ENST00000345009 UGGT1Q9NYU2 1555 aa17.33■□□□□ 0.37
SNCA-202ENST00000345009 ANKLE2Q86XL3 938 aa17.32■□□□□ 0.36
SNCA-202ENST00000345009 EID1Q9Y6B2 187 aa17.32■□□□□ 0.36
SNCA-202ENST00000345009 SYNMO15061 1565 aa17.3■□□□□ 0.36
SNCA-202ENST00000345009 CCDC144AA2RUR9 1427 aa17.3■□□□□ 0.36
SNCA-202ENST00000345009 ZNF142P52746 1687 aaPredicted RBP17.29■□□□□ 0.36
SNCA-202ENST00000345009 TRPM2O94759 1503 aa17.28■□□□□ 0.36
SNCA-202ENST00000345009 SPHKAPQ2M3C7 1700 aa17.28■□□□□ 0.36
SNCA-202ENST00000345009 ZNF326Q5BKZ1 582 aaKnown RBP17.28■□□□□ 0.36
SNCA-202ENST00000345009 PLA2R1Q13018 1463 aa17.27■□□□□ 0.36
SNCA-202ENST00000345009 TXNDC2Q86VQ3 553 aa17.27■□□□□ 0.36
SNCA-202ENST00000345009 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.27■□□□□ 0.36
SNCA-202ENST00000345009 TMEM2Q9UHN6 1383 aa17.26■□□□□ 0.35
SNCA-202ENST00000345009 ANKRD30BQ9BXX2 1392 aa17.25■□□□□ 0.35
SNCA-202ENST00000345009 PIK3C2BO00750 1634 aa17.25■□□□□ 0.35
SNCA-202ENST00000345009 KDM5AP29375 1690 aaKnown RBP17.24■□□□□ 0.35
SNCA-202ENST00000345009 PPP1R15AO75807 674 aaPredicted RBP17.24■□□□□ 0.35
SNCA-202ENST00000345009 NCKAP5LQ9HCH0 1330 aa17.23■□□□□ 0.35
SNCA-202ENST00000345009 ADGRB3O60242 1522 aa17.23■□□□□ 0.35
SNCA-202ENST00000345009 RPGRIP1LQ68CZ1 1315 aa17.22■□□□□ 0.35
SNCA-202ENST00000345009 UBR1Q8IWV7 1749 aa17.22■□□□□ 0.35
SNCA-202ENST00000345009 BCANQ96GW7 911 aa17.21■□□□□ 0.35
SNCA-202ENST00000345009 RGL3Q3MIN7 710 aa17.2■□□□□ 0.34
SNCA-202ENST00000345009 SLIT1O75093 1534 aa17.2■□□□□ 0.34
SNCA-202ENST00000345009 TMEM131LA2VDJ0 1609 aa17.19■□□□□ 0.34
SNCA-202ENST00000345009 VGFO15240 615 aaPredicted RBP17.19■□□□□ 0.34
SNCA-202ENST00000345009 LTKP29376 864 aa17.19■□□□□ 0.34
SNCA-202ENST00000345009 RIMS2Q9UQ26 1411 aa17.19■□□□□ 0.34
SNCA-202ENST00000345009 SCAF11Q99590 1463 aaKnown RBP17.18■□□□□ 0.34
SNCA-202ENST00000345009 ARHGAP23Q9P227 1491 aa17.18■□□□□ 0.34
SNCA-202ENST00000345009 CLTCL1P53675 1640 aa17.18■□□□□ 0.34
SNCA-202ENST00000345009 DHX57Q6P158 1386 aaKnown RBP17.18■□□□□ 0.34
SNCA-202ENST00000345009 KIF1BO60333 1816 aa17.18■□□□□ 0.34
SNCA-202ENST00000345009 NPHP4O75161 1426 aaPredicted RBP17.15■□□□□ 0.34
SNCA-202ENST00000345009 STAC3Q96MF2 364 aa17.15■□□□□ 0.34
SNCA-202ENST00000345009 MED14O60244 1454 aa17.14■□□□□ 0.33
SNCA-202ENST00000345009 NUTM2DQ5VT03 806 aaPredicted RBP17.14■□□□□ 0.33
SNCA-202ENST00000345009 ZFYVE9O95405 1425 aa17.13■□□□□ 0.33
SNCA-202ENST00000345009 STRCQ7RTU9 1775 aa17.13■□□□□ 0.33
SNCA-202ENST00000345009 SPATA31E1Q6ZUB1 1445 aa17.13■□□□□ 0.33
SNCA-202ENST00000345009 PLEKHG1Q9ULL1 1385 aa17.12■□□□□ 0.33
SNCA-202ENST00000345009 NEURL4Q96JN8 1562 aa17.11■□□□□ 0.33
SNCA-202ENST00000345009 NEUROD1Q13562 356 aa17.11■□□□□ 0.33
SNCA-202ENST00000345009 MYO5BQ9ULV0 1848 aa17.11■□□□□ 0.33
SNCA-202ENST00000345009 POLR1AO95602 1720 aaPredicted RBP17.1■□□□□ 0.33
SNCA-202ENST00000345009 CCER1Q8TC90 406 aaPredicted RBP17.1■□□□□ 0.33
SNCA-202ENST00000345009 CLSPNQ9HAW4 1339 aa17.1■□□□□ 0.33
SNCA-202ENST00000345009 POTEHQ6S545 545 aa17.09■□□□□ 0.33
SNCA-202ENST00000345009 TBX22Q9Y458 520 aa17.09■□□□□ 0.33
SNCA-202ENST00000345009 DCAF11Q8TEB1 546 aa17.08■□□□□ 0.32
SNCA-202ENST00000345009 SLC26A8Q96RN1 970 aa17.08■□□□□ 0.32
SNCA-202ENST00000345009 SIN3AQ96ST3 1273 aa17.08■□□□□ 0.32
SNCA-202ENST00000345009 KDM2AQ9Y2K7 1162 aa17.06■□□□□ 0.32
SNCA-202ENST00000345009 IQGAP1P46940 1657 aa17.06■□□□□ 0.32
SNCA-202ENST00000345009 NEXMIFQ5QGS0 1516 aa17.05■□□□□ 0.32
SNCA-202ENST00000345009 ZBTB12Q9Y330 459 aaPredicted RBP17.03■□□□□ 0.32
SNCA-202ENST00000345009 ADGRF5Q8IZF2 1346 aa17.02■□□□□ 0.32
SNCA-202ENST00000345009 TONSLQ96HA7 1378 aa17.02■□□□□ 0.31
SNCA-202ENST00000345009 KCNA6P17658 529 aa17.01■□□□□ 0.31
SNCA-202ENST00000345009 PIK3R4Q99570 1358 aa17.01■□□□□ 0.31
SNCA-202ENST00000345009 ZNF335Q9H4Z2 1342 aaPredicted RBP17■□□□□ 0.31
SNCA-202ENST00000345009 L3MBTL2Q969R5 705 aa17■□□□□ 0.31
SNCA-202ENST00000345009 PPLO60437 1756 aa17■□□□□ 0.31
SNCA-202ENST00000345009 TIMELESSQ9UNS1 1208 aa16.99■□□□□ 0.31
SNCA-202ENST00000345009 MYOM2P54296 1465 aa16.99■□□□□ 0.31
SNCA-202ENST00000345009 DIP2AQ14689 1571 aa16.98■□□□□ 0.31
SNCA-202ENST00000345009 SETBP1Q9Y6X0 1596 aa16.98■□□□□ 0.31
SNCA-202ENST00000345009 ADAMTS13Q76LX8 1427 aa16.98■□□□□ 0.31
SNCA-202ENST00000345009 C14orf93Q9H972 538 aaKnown RBP16.97■□□□□ 0.31
SNCA-202ENST00000345009 AMOTL2Q9Y2J4 779 aa16.96■□□□□ 0.31
SNCA-202ENST00000345009 PIK3C2GO75747 1445 aa16.96■□□□□ 0.3
SNCA-202ENST00000345009 PROSER2Q86WR7 435 aaPredicted RBP16.94■□□□□ 0.3
SNCA-202ENST00000345009 CPS1P31327 1500 aa16.94■□□□□ 0.3
SNCA-202ENST00000345009 NRXN1Q9ULB1 1477 aa16.93■□□□□ 0.3
SNCA-202ENST00000345009 CFAP70Q5T0N1 1121 aa16.93■□□□□ 0.3
SNCA-202ENST00000345009 CERKQ8TCT0 537 aa16.93■□□□□ 0.3
SNCA-202ENST00000345009 IFT172Q9UG01 1749 aa16.93■□□□□ 0.3
SNCA-202ENST00000345009 ALKQ9UM73 1620 aa16.92■□□□□ 0.3
SNCA-202ENST00000345009 METP08581 1390 aa16.92■□□□□ 0.3
SNCA-202ENST00000345009 NRXN3Q9Y4C0 1643 aa16.89■□□□□ 0.29
SNCA-202ENST00000345009 TMEM132EQ6IEE7 984 aa16.89■□□□□ 0.29
SNCA-202ENST00000345009 C14orf37Q86TY3 774 aa16.89■□□□□ 0.29
SNCA-202ENST00000345009 STK26Q9P289 416 aa16.89■□□□□ 0.29
SNCA-202ENST00000345009 LTBP4Q8N2S1 1624 aa16.88■□□□□ 0.29
SNCA-202ENST00000345009 NKTRP30414 1462 aaKnown RBP16.88■□□□□ 0.29
SNCA-202ENST00000345009 PRAG1Q86YV5 1406 aa16.87■□□□□ 0.29
SNCA-202ENST00000345009 LAMC1P11047 1609 aa16.87■□□□□ 0.29
SNCA-202ENST00000345009 LRPPRCP42704 1394 aaKnown RBP16.87■□□□□ 0.29
SNCA-202ENST00000345009 CHD2O14647 1828 aaKnown RBP16.86■□□□□ 0.29
SNCA-202ENST00000345009 SIRT1Q96EB6 747 aa16.86■□□□□ 0.29
SNCA-202ENST00000345009 ABCC11Q96J66 1382 aa16.86■□□□□ 0.29
SNCA-202ENST00000345009 NCOA3Q9Y6Q9 1424 aa16.86■□□□□ 0.29
SNCA-202ENST00000345009 TMEM94Q12767 1356 aa16.85■□□□□ 0.29
SNCA-202ENST00000345009 PTPRUQ92729 1446 aa16.85■□□□□ 0.29
SNCA-202ENST00000345009 IQSEC2Q5JU85 1478 aa16.85■□□□□ 0.29
SNCA-202ENST00000345009 TOM1O60784 492 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms