RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CENPJQ9HC77 1338 aaPredicted RBP10.62□□□□□ -0.71
ATG4A-201ENST00000343524 NAP1L5Q96NT1 182 aaPredicted RBP10.62□□□□□ -0.71
ATG4A-201ENST00000343524 FGD6Q6ZV73 1430 aa10.61□□□□□ -0.71
ATG4A-201ENST00000343524 CLCN1P35523 988 aa10.61□□□□□ -0.71
ATG4A-201ENST00000343524 HSPA1LP34931 641 aa10.6□□□□□ -0.71
ATG4A-201ENST00000343524 UHRF1BP1Q6BDS2 1440 aa10.6□□□□□ -0.71
ATG4A-201ENST00000343524 MIA2Q96PC5 1412 aa10.6□□□□□ -0.71
ATG4A-201ENST00000343524 KTN1Q86UP2 1357 aaKnown RBP10.6□□□□□ -0.71
ATG4A-201ENST00000343524 UGGT2Q9NYU1 1516 aa10.6□□□□□ -0.71
ATG4A-201ENST00000343524 EFCAB5A4FU69 1503 aa10.59□□□□□ -0.71
ATG4A-201ENST00000343524 ABCA9Q8IUA7 1624 aa10.59□□□□□ -0.71
ATG4A-201ENST00000343524 PDE3BQ13370 1112 aa10.59□□□□□ -0.71
ATG4A-201ENST00000343524 SIGLEC1Q9BZZ2 1709 aa10.59□□□□□ -0.71
ATG4A-201ENST00000343524 KIAA0556O60303 1618 aa10.58□□□□□ -0.72
ATG4A-201ENST00000343524 DCAF11Q8TEB1 546 aa10.58□□□□□ -0.72
ATG4A-201ENST00000343524 NAIPQ13075 1403 aa10.57□□□□□ -0.72
ATG4A-201ENST00000343524 RRAGDQ9NQL2 400 aaPredicted RBP10.57□□□□□ -0.72
ATG4A-201ENST00000343524 ROCK2O75116 1388 aaKnown RBP10.57□□□□□ -0.72
ATG4A-201ENST00000343524 ARHGEF12Q9NZN5 1544 aa10.57□□□□□ -0.72
ATG4A-201ENST00000343524 TPM2P07951 284 aa10.56□□□□□ -0.72
ATG4A-201ENST00000343524 CARMIL1Q5VZK9 1371 aa10.56□□□□□ -0.72
ATG4A-201ENST00000343524 ABCA8O94911 1581 aa10.56□□□□□ -0.72
ATG4A-201ENST00000343524 RCAN3Q9UKA8 241 aa10.56□□□□□ -0.72
ATG4A-201ENST00000343524 VIRMAQ69YN4 1812 aaKnown RBP10.55□□□□□ -0.72
ATG4A-201ENST00000343524 FHOD3Q2V2M9 1422 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 SETD1BQ9UPS6 1966 aaKnown RBP10.55□□□□□ -0.72
ATG4A-201ENST00000343524 CEBPAP49715 358 aaPredicted RBP10.55□□□□□ -0.72
ATG4A-201ENST00000343524 CALD1Q05682 793 aaKnown RBP10.55□□□□□ -0.72
ATG4A-201ENST00000343524 MLECQ14165 292 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 EXOC6Q8TAG9 804 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 MS4A3Q96HJ5 214 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 RICTORQ6R327 1708 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 ZMYM4Q5VZL5 1548 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 CASKIN1Q8WXD9 1431 aa10.55□□□□□ -0.72
ATG4A-201ENST00000343524 LRPPRCP42704 1394 aaKnown RBP10.55□□□□□ -0.72
ATG4A-201ENST00000343524 FRAT2O75474 233 aaPredicted RBP10.54□□□□□ -0.72
ATG4A-201ENST00000343524 FAM161AQ3B820 660 aa10.54□□□□□ -0.72
ATG4A-201ENST00000343524 KIF7Q2M1P5 1343 aa10.54□□□□□ -0.72
ATG4A-201ENST00000343524 DENND4BO75064 1496 aaPredicted RBP10.54□□□□□ -0.72
ATG4A-201ENST00000343524 POTEB2H3BUK9 544 aa10.54□□□□□ -0.72
ATG4A-201ENST00000343524 PDCL3Q9H2J4 239 aa10.54□□□□□ -0.72
ATG4A-201ENST00000343524 BRD4O60885 1362 aaPredicted RBP10.53□□□□□ -0.72
ATG4A-201ENST00000343524 DHX29Q7Z478 1369 aaKnown RBP10.53□□□□□ -0.72
ATG4A-201ENST00000343524 SPATA31E1Q6ZUB1 1445 aa10.53□□□□□ -0.72
ATG4A-201ENST00000343524 PLEKHH2Q8IVE3 1493 aa10.53□□□□□ -0.72
ATG4A-201ENST00000343524 ZFYVE16Q7Z3T8 1539 aa10.53□□□□□ -0.72
ATG4A-201ENST00000343524 INSRP06213 1382 aa10.53□□□□□ -0.72
ATG4A-201ENST00000343524 PLEKHG5O94827 1062 aa10.52□□□□□ -0.72
ATG4A-201ENST00000343524 TSPYL2Q9H2G4 693 aaPredicted RBP10.52□□□□□ -0.72
ATG4A-201ENST00000343524 ISY1Q9ULR0 285 aaKnown RBP10.52□□□□□ -0.72
ATG4A-201ENST00000343524 CCDC61Q9Y6R9 512 aa10.52□□□□□ -0.72
ATG4A-201ENST00000343524 BECN1Q14457 450 aa10.52□□□□□ -0.73
ATG4A-201ENST00000343524 ZNF335Q9H4Z2 1342 aaPredicted RBP10.52□□□□□ -0.73
ATG4A-201ENST00000343524 MAGI2Q86UL8 1455 aa10.51□□□□□ -0.73
ATG4A-201ENST00000343524 CENPQQ7L2Z9 268 aaPredicted RBP10.51□□□□□ -0.73
ATG4A-201ENST00000343524 GOLGA6L3A6NEY3 463 aa10.5□□□□□ -0.73
ATG4A-201ENST00000343524 ASTLQ6HA08 431 aaPredicted RBP10.5□□□□□ -0.73
ATG4A-201ENST00000343524 PNISRQ8TF01 805 aaKnown RBP10.5□□□□□ -0.73
ATG4A-201ENST00000343524 SUPT6HQ7KZ85 1726 aaKnown RBP10.5□□□□□ -0.73
ATG4A-201ENST00000343524 TMC1Q8TDI8 760 aa10.5□□□□□ -0.73
ATG4A-201ENST00000343524 MAP7D2Q96T17 732 aa10.5□□□□□ -0.73
ATG4A-201ENST00000343524 RGS17Q9UGC6 210 aaPredicted RBP10.5□□□□□ -0.73
ATG4A-201ENST00000343524 RPRD2Q5VT52 1461 aaKnown RBP10.49□□□□□ -0.73
ATG4A-201ENST00000343524 OTUD5Q96G74 571 aa10.49□□□□□ -0.73
ATG4A-201ENST00000343524 KIF15Q9NS87 1388 aa10.49□□□□□ -0.73
ATG4A-201ENST00000343524 MYOM3Q5VTT5 1437 aa10.49□□□□□ -0.73
ATG4A-201ENST00000343524 ATMINO43313 823 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-201ENST00000343524 EHBP1L1Q8N3D4 1523 aa10.48□□□□□ -0.73
ATG4A-201ENST00000343524 PIP4K2BP78356 416 aa10.48□□□□□ -0.73
ATG4A-201ENST00000343524 CCDC144AA2RUR9 1427 aa10.48□□□□□ -0.73
ATG4A-201ENST00000343524 KIF14Q15058 1648 aa10.48□□□□□ -0.73
ATG4A-201ENST00000343524 ATP10BO94823 1461 aa10.47□□□□□ -0.73
ATG4A-201ENST00000343524 TOM1O60784 492 aa10.46□□□□□ -0.73
ATG4A-201ENST00000343524 KIF12Q96FN5 646 aa10.46□□□□□ -0.73
ATG4A-201ENST00000343524 KDM2BQ8NHM5 1336 aa10.46□□□□□ -0.74
ATG4A-201ENST00000343524 MYBBP1AQ9BQG0 1328 aaKnown RBP10.46□□□□□ -0.74
ATG4A-201ENST00000343524 MRE11P49959 708 aa10.46□□□□□ -0.74
ATG4A-201ENST00000343524 POGKQ9P215 609 aa10.46□□□□□ -0.74
ATG4A-201ENST00000343524 PTPRKQ15262 1439 aa10.45□□□□□ -0.74
ATG4A-201ENST00000343524 FSD2A1L4K1 749 aa10.45□□□□□ -0.74
ATG4A-201ENST00000343524 RALBP1Q15311 655 aa10.45□□□□□ -0.74
ATG4A-201ENST00000343524 TCOF1Q13428 1488 aaKnown RBP10.45□□□□□ -0.74
ATG4A-201ENST00000343524 SLC4A3P48751 1232 aa10.45□□□□□ -0.74
ATG4A-201ENST00000343524 C8orf34Q49A92 452 aa10.45□□□□□ -0.74
ATG4A-201ENST00000343524 RASEFQ8IZ41 740 aa10.45□□□□□ -0.74
ATG4A-201ENST00000343524 MTUS2Q5JR59 1369 aa10.44□□□□□ -0.74
ATG4A-201ENST00000343524 TERF1P54274 439 aa10.44□□□□□ -0.74
ATG4A-201ENST00000343524 AAMPQ13685 434 aa10.44□□□□□ -0.74
ATG4A-201ENST00000343524 ATP10AO60312 1499 aa10.44□□□□□ -0.74
ATG4A-201ENST00000343524 TRAPPC8Q9Y2L5 1435 aa10.44□□□□□ -0.74
ATG4A-201ENST00000343524 CAMSAP1Q5T5Y3 1602 aa10.44□□□□□ -0.74
ATG4A-201ENST00000343524 NCLP19338 710 aaKnown RBP10.43□□□□□ -0.74
ATG4A-201ENST00000343524 RBM10P98175 930 aaKnown RBP10.43□□□□□ -0.74
ATG4A-201ENST00000343524 MTERF4Q7Z6M4 381 aaKnown RBP10.43□□□□□ -0.74
ATG4A-201ENST00000343524 L3MBTL2Q969R5 705 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 E9PCH4 1651 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 C9orf84Q5VXU9 1444 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 KDM5CP41229 1560 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 CFAP74Q9C0B2 1584 aa10.43□□□□□ -0.74
ATG4A-201ENST00000343524 EIF3AQ14152 1382 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms