RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PLEKHH1Q9ULM0 1364 aa29.25■■■□□ 2.27
TRIM28-202ENST00000341753 ZMYM4Q5VZL5 1548 aa29.25■■■□□ 2.27
TRIM28-202ENST00000341753 TMF1P82094 1093 aa29.23■■■□□ 2.27
TRIM28-202ENST00000341753 FRAT1Q92837 279 aaPredicted RBP29.23■■■□□ 2.27
TRIM28-202ENST00000341753 GPRASP1Q5JY77 1395 aa29.23■■■□□ 2.27
TRIM28-202ENST00000341753 WDR7Q9Y4E6 1490 aa29.23■■■□□ 2.27
TRIM28-202ENST00000341753 KIF3BO15066 747 aa29.23■■■□□ 2.27
TRIM28-202ENST00000341753 DUSP27Q5VZP5 1158 aa29.22■■■□□ 2.27
TRIM28-202ENST00000341753 CENPQQ7L2Z9 268 aaPredicted RBP29.22■■■□□ 2.27
TRIM28-202ENST00000341753 ZFYVE16Q7Z3T8 1539 aa29.22■■■□□ 2.27
TRIM28-202ENST00000341753 C8orf34Q49A92 452 aa29.22■■■□□ 2.27
TRIM28-202ENST00000341753 FANCAO15360 1455 aa29.21■■■□□ 2.27
TRIM28-202ENST00000341753 SCAPERQ9BY12 1400 aa29.21■■■□□ 2.27
TRIM28-202ENST00000341753 WDR43Q15061 677 aaKnown RBP eCLIP29.2■■■□□ 2.272e-6■■□□□ 11.4
TRIM28-202ENST00000341753 FAM161AQ3B820 660 aa29.2■■■□□ 2.26
TRIM28-202ENST00000341753 ATP10AO60312 1499 aa29.18■■■□□ 2.26
TRIM28-202ENST00000341753 PRDM15P57071 1507 aaPredicted RBP29.17■■■□□ 2.26
TRIM28-202ENST00000341753 PPP2R1AP30153 589 aa29.16■■■□□ 2.26
TRIM28-202ENST00000341753 CCDC146Q8IYE0 955 aa29.15■■■□□ 2.26
TRIM28-202ENST00000341753 INSRP06213 1382 aa29.14■■■□□ 2.26
TRIM28-202ENST00000341753 FRAT2O75474 233 aaPredicted RBP29.14■■■□□ 2.25
TRIM28-202ENST00000341753 GOLGA2Q08379 1002 aa29.13■■■□□ 2.25
TRIM28-202ENST00000341753 KNSTRNQ9Y448 316 aa29.13■■■□□ 2.25
TRIM28-202ENST00000341753 ASXL2Q76L83 1435 aa29.12■■■□□ 2.25
TRIM28-202ENST00000341753 RTEL1-TNFRSF6BF6WH68 1400 aa29.12■■■□□ 2.25
TRIM28-202ENST00000341753 ADGRL1O94910 1474 aa29.12■■■□□ 2.25
TRIM28-202ENST00000341753 ATP7AQ04656 1500 aa29.1■■■□□ 2.25
TRIM28-202ENST00000341753 SPINK5Q9NQ38 1064 aaPredicted RBP29.08■■■□□ 2.25
TRIM28-202ENST00000341753 EIF2AK4Q9P2K8 1649 aaKnown RBP29.07■■■□□ 2.24
TRIM28-202ENST00000341753 ZNF521Q96K83 1311 aa29.07■■■□□ 2.24
TRIM28-202ENST00000341753 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.07■■■□□ 2.24
TRIM28-202ENST00000341753 CLTCL1P53675 1640 aa29.06■■■□□ 2.24
TRIM28-202ENST00000341753 UGGT1Q9NYU2 1555 aa29.06■■■□□ 2.24
TRIM28-202ENST00000341753 BCAR3O75815 825 aa29.06■■■□□ 2.24
TRIM28-202ENST00000341753 ABCA9Q8IUA7 1624 aa29.05■■■□□ 2.24
TRIM28-202ENST00000341753 ARAP3Q8WWN8 1544 aa29.04■■■□□ 2.24
TRIM28-202ENST00000341753 TRPM2O94759 1503 aa29.04■■■□□ 2.24
TRIM28-202ENST00000341753 SLFN5Q08AF3 891 aa29.04■■■□□ 2.24
TRIM28-202ENST00000341753 AMER1Q5JTC6 1135 aaPredicted RBP29.04■■■□□ 2.24
TRIM28-202ENST00000341753 KANK1Q14678 1352 aa29.03■■■□□ 2.24
TRIM28-202ENST00000341753 LAMC1P11047 1609 aa29.02■■■□□ 2.24
TRIM28-202ENST00000341753 MADDQ8WXG6 1647 aa29.02■■■□□ 2.24
TRIM28-202ENST00000341753 INO80Q9ULG1 1556 aaPredicted RBP29.02■■■□□ 2.24
TRIM28-202ENST00000341753 SPHKAPQ2M3C7 1700 aa29.01■■■□□ 2.23
TRIM28-202ENST00000341753 PTPRTO14522 1441 aa29.01■■■□□ 2.23
TRIM28-202ENST00000341753 APAF1O14727 1248 aa29■■■□□ 2.23
TRIM28-202ENST00000341753 CFAP70Q5T0N1 1121 aa28.99■■■□□ 2.23
TRIM28-202ENST00000341753 RNF17Q9BXT8 1623 aaKnown RBP28.99■■■□□ 2.23
TRIM28-202ENST00000341753 IGHDP01880 384 aa28.98■■■□□ 2.23
TRIM28-202ENST00000341753 DEPDC5O75140 1603 aa28.98■■■□□ 2.23
TRIM28-202ENST00000341753 ADGRF5Q8IZF2 1346 aa28.96■■■□□ 2.23
TRIM28-202ENST00000341753 NPM1P06748 294 aaKnown RBP eCLIP28.96■■■□□ 2.23
TRIM28-202ENST00000341753 CHGAP10645 457 aaKnown RBP28.96■■■□□ 2.23
TRIM28-202ENST00000341753 DMRT2Q9Y5R5 561 aa28.96■■■□□ 2.23
TRIM28-202ENST00000341753 TET3O43151 1660 aa28.95■■■□□ 2.22
TRIM28-202ENST00000341753 CEP152O94986 1710 aa28.94■■■□□ 2.22
TRIM28-202ENST00000341753 OSCARQ8IYS5 282 aa28.94■■■□□ 2.22
TRIM28-202ENST00000341753 GGT6Q6P531 493 aa28.93■■■□□ 2.22
TRIM28-202ENST00000341753 SEC24BO95487 1268 aa28.92■■■□□ 2.22
TRIM28-202ENST00000341753 MROH1Q8NDA8 1641 aa28.92■■■□□ 2.22
TRIM28-202ENST00000341753 TRMT2AQ8IZ69 625 aaKnown RBP28.9■■■□□ 2.22
TRIM28-202ENST00000341753 VWDEQ8N2E2 1590 aa28.9■■■□□ 2.22
TRIM28-202ENST00000341753 SCAF11Q99590 1463 aaKnown RBP28.89■■■□□ 2.22
TRIM28-202ENST00000341753 KIDINS220Q9ULH0 1771 aa28.88■■■□□ 2.21
TRIM28-202ENST00000341753 USP19O94966 1318 aa28.88■■■□□ 2.21
TRIM28-202ENST00000341753 EIF5BO60841 1220 aaKnown RBP28.88■■■□□ 2.21
TRIM28-202ENST00000341753 IQGAP1P46940 1657 aa28.88■■■□□ 2.21
TRIM28-202ENST00000341753 NKTRP30414 1462 aaKnown RBP28.87■■■□□ 2.21
TRIM28-202ENST00000341753 PANK1Q8TE04 598 aa28.87■■■□□ 2.21
TRIM28-202ENST00000341753 CFAP65Q6ZU64 1925 aaKnown RBP28.87■■■□□ 2.21
TRIM28-202ENST00000341753 EIF3AQ14152 1382 aaKnown RBP28.86■■■□□ 2.21
TRIM28-202ENST00000341753 SLKQ9H2G2 1235 aaPredicted RBP28.86■■■□□ 2.21
TRIM28-202ENST00000341753 COG6Q9Y2V7 657 aa28.86■■■□□ 2.21
TRIM28-202ENST00000341753 SENP3Q9H4L4 574 aaPredicted RBP28.85■■■□□ 2.21
TRIM28-202ENST00000341753 POGKQ9P215 609 aa28.85■■■□□ 2.21
TRIM28-202ENST00000341753 CD109Q6YHK3 1445 aa28.84■■■□□ 2.21
TRIM28-202ENST00000341753 CANXP27824 592 aaKnown RBP28.84■■■□□ 2.21
TRIM28-202ENST00000341753 ASXL1Q8IXJ9 1541 aa28.84■■■□□ 2.21
TRIM28-202ENST00000341753 RAPGEF3O95398 923 aa28.83■■■□□ 2.21
TRIM28-202ENST00000341753 PIK3C2GO75747 1445 aa28.81■■■□□ 2.2
TRIM28-202ENST00000341753 E9PSI1 815 aa28.81■■■□□ 2.2
TRIM28-202ENST00000341753 CDCA8Q53HL2 280 aa28.8■■■□□ 2.2
TRIM28-202ENST00000341753 PPRC1Q5VV67 1664 aaKnown RBP28.8■■■□□ 2.2
TRIM28-202ENST00000341753 ZNF518AQ6AHZ1 1483 aa28.8■■■□□ 2.2
TRIM28-202ENST00000341753 NUTM2DQ5VT03 806 aaPredicted RBP28.8■■■□□ 2.2
TRIM28-202ENST00000341753 EFCAB6Q5THR3 1501 aa28.78■■■□□ 2.2
TRIM28-202ENST00000341753 NEUROD2Q15784 382 aa28.78■■■□□ 2.2
TRIM28-202ENST00000341753 CLUAP1Q96AJ1 413 aa28.77■■■□□ 2.2
TRIM28-202ENST00000341753 MROH2AA6NES4 1674 aa28.76■■■□□ 2.19
TRIM28-202ENST00000341753 CENPJQ9HC77 1338 aaPredicted RBP28.76■■■□□ 2.19
TRIM28-202ENST00000341753 SYNMO15061 1565 aa28.76■■■□□ 2.19
TRIM28-202ENST00000341753 ABCA6Q8N139 1617 aa28.75■■■□□ 2.19
TRIM28-202ENST00000341753 NOS1P29475 1434 aa28.75■■■□□ 2.19
TRIM28-202ENST00000341753 ARXQ96QS3 562 aa28.74■■■□□ 2.19
TRIM28-202ENST00000341753 TRAK1Q9UPV9 953 aa28.74■■■□□ 2.19
TRIM28-202ENST00000341753 CGNL1Q0VF96 1302 aa28.73■■■□□ 2.19
TRIM28-202ENST00000341753 TMEM132EQ6IEE7 984 aa28.73■■■□□ 2.19
TRIM28-202ENST00000341753 STAC3Q96MF2 364 aa28.73■■■□□ 2.19
TRIM28-202ENST00000341753 RRP7AQ9Y3A4 280 aaKnown RBP28.73■■■□□ 2.19
TRIM28-202ENST00000341753 TNNQ9UQP3 1299 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms