RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CGNL1Q0VF96 1302 aa10.68□□□□□ -0.7
RTN3-202ENST00000339997 NASPP49321 788 aaPredicted RBP10.67□□□□□ -0.7
RTN3-202ENST00000339997 DZIP1LQ8IYY4 767 aaKnown RBP10.67□□□□□ -0.7
RTN3-202ENST00000339997 BCAR3O75815 825 aa10.67□□□□□ -0.7
RTN3-202ENST00000339997 TOP2BQ02880 1626 aa10.67□□□□□ -0.7
RTN3-202ENST00000339997 GOLGA6L1Q8N7Z2 621 aa10.67□□□□□ -0.7
RTN3-202ENST00000339997 CFAP44Q96MT7 982 aa10.67□□□□□ -0.7
RTN3-202ENST00000339997 C1orf115Q9H7X2 142 aa10.67□□□□□ -0.7
RTN3-202ENST00000339997 HMOX1P09601 288 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 HTATSF1O43719 755 aaKnown RBP10.66□□□□□ -0.7
RTN3-202ENST00000339997 PHF14O94880 888 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 CCDC27Q2M243 656 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 FAM184AQ8NB25 1140 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 IFT57Q9NWB7 429 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 KIF21BO75037 1637 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 ZNF644Q9H582 1327 aaPredicted RBP10.66□□□□□ -0.7
RTN3-202ENST00000339997 HOMER1Q86YM7 354 aa10.66□□□□□ -0.7
RTN3-202ENST00000339997 SKOR2Q2VWA4 1001 aaPredicted RBP10.65□□□□□ -0.7
RTN3-202ENST00000339997 TAF7LQ5H9L4 462 aa10.65□□□□□ -0.7
RTN3-202ENST00000339997 BICD2Q8TD16 824 aa10.65□□□□□ -0.7
RTN3-202ENST00000339997 SPAG9O60271 1321 aaKnown RBP10.65□□□□□ -0.7
RTN3-202ENST00000339997 RIPK4P57078 832 aa10.65□□□□□ -0.7
RTN3-202ENST00000339997 AMPHP49418 695 aa10.65□□□□□ -0.7
RTN3-202ENST00000339997 TPM4P67936 248 aa10.65□□□□□ -0.7
RTN3-202ENST00000339997 MINK1Q8N4C8 1332 aaPredicted RBP10.65□□□□□ -0.71
RTN3-202ENST00000339997 PRPF40AO75400 957 aaKnown RBP10.64□□□□□ -0.71
RTN3-202ENST00000339997 KANK1Q14678 1352 aa10.64□□□□□ -0.71
RTN3-202ENST00000339997 TERF2IPQ9NYB0 399 aa10.63□□□□□ -0.71
RTN3-202ENST00000339997 NGDNQ8NEJ9 315 aaKnown RBP10.63□□□□□ -0.71
RTN3-202ENST00000339997 BACH2Q9BYV9 841 aa10.63□□□□□ -0.71
RTN3-202ENST00000339997 MRE11P49959 708 aa10.62□□□□□ -0.71
RTN3-202ENST00000339997 FMNL2Q96PY5 1086 aa10.62□□□□□ -0.71
RTN3-202ENST00000339997 ANKRD30AQ9BXX3 1397 aa10.62□□□□□ -0.71
RTN3-202ENST00000339997 TPM3P06753 285 aa10.62□□□□□ -0.71
RTN3-202ENST00000339997 SPC24Q8NBT2 197 aa10.62□□□□□ -0.71
RTN3-202ENST00000339997 DIAPH3Q9NSV4 1193 aa10.62□□□□□ -0.71
RTN3-202ENST00000339997 GGNBP2Q9H3C7 697 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.61□□□□□ -0.71
RTN3-202ENST00000339997 GPATCH3Q96I76 525 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 DDX19BQ9UMR2 479 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 PDZRN3Q9UPQ7 1066 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 CCDC7Q96M83 1385 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 CSPP1Q1MSJ5 1256 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 ATAD2BQ9ULI0 1458 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 TTLL5Q6EMB2 1281 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 FBXO3Q9UK99 471 aa10.61□□□□□ -0.71
RTN3-202ENST00000339997 TPD52L1Q16890 204 aaPredicted RBP10.6□□□□□ -0.71
RTN3-202ENST00000339997 DHX37Q8IY37 1157 aaKnown RBP10.6□□□□□ -0.71
RTN3-202ENST00000339997 STK11IPQ8N1F8 1099 aa10.6□□□□□ -0.71
RTN3-202ENST00000339997 TSR2Q969E8 191 aaKnown RBP10.6□□□□□ -0.71
RTN3-202ENST00000339997 FKBP5Q13451 457 aaPredicted RBP10.6□□□□□ -0.71
RTN3-202ENST00000339997 PRDM10Q9NQV6 1147 aa10.59□□□□□ -0.71
RTN3-202ENST00000339997 REC8O95072 547 aa10.59□□□□□ -0.71
RTN3-202ENST00000339997 NEK4P51957 841 aa10.59□□□□□ -0.71
RTN3-202ENST00000339997 CEBPZQ03701 1054 aaKnown RBP10.59□□□□□ -0.71
RTN3-202ENST00000339997 CUX1P39880 1505 aa10.59□□□□□ -0.71
RTN3-202ENST00000339997 FIBPO43427 364 aa10.59□□□□□ -0.71
RTN3-202ENST00000339997 SMC3Q9UQE7 1217 aa10.58□□□□□ -0.72
RTN3-202ENST00000339997 WASHC2CQ9Y4E1 1318 aa10.58□□□□□ -0.72
RTN3-202ENST00000339997 TMEM132EQ6IEE7 984 aa10.58□□□□□ -0.72
RTN3-202ENST00000339997 TCP11L2Q8N4U5 519 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 ATP6V1DQ9Y5K8 247 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 NBPF1Q3BBV0 1214 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 VPS53Q5VIR6 699 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 EFCAB2Q5VUJ9 269 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.57□□□□□ -0.72
RTN3-202ENST00000339997 C9orf78Q9NZ63 289 aaPredicted RBP10.57□□□□□ -0.72
RTN3-202ENST00000339997 APPP05067 770 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 C20orf194Q5TEA3 1177 aa10.57□□□□□ -0.72
RTN3-202ENST00000339997 ZKSCAN1P17029 563 aaPredicted RBP10.56□□□□□ -0.72
RTN3-202ENST00000339997 ATP2B1P20020 1258 aa10.56□□□□□ -0.72
RTN3-202ENST00000339997 PHLDB1Q86UU1 1377 aa10.56□□□□□ -0.72
RTN3-202ENST00000339997 MTHFSP49914 203 aa10.56□□□□□ -0.72
RTN3-202ENST00000339997 NBPF8Q3BBV2 869 aa10.56□□□□□ -0.72
RTN3-202ENST00000339997 TRIM5Q9C035 493 aa10.56□□□□□ -0.72
RTN3-202ENST00000339997 NUCB2P80303 420 aa10.55□□□□□ -0.72
RTN3-202ENST00000339997 RAD21O60216 631 aa10.55□□□□□ -0.72
RTN3-202ENST00000339997 EXOSC9Q06265 439 aaKnown RBP10.55□□□□□ -0.72
RTN3-202ENST00000339997 NUTM2GQ5VZR2 741 aa10.55□□□□□ -0.72
RTN3-202ENST00000339997 DIAPH1O60610 1272 aaKnown RBP10.55□□□□□ -0.72
RTN3-202ENST00000339997 PCMTD1Q96MG8 357 aaPredicted RBP10.55□□□□□ -0.72
RTN3-202ENST00000339997 CCDC144AA2RUR9 1427 aa10.55□□□□□ -0.72
RTN3-202ENST00000339997 AIMP1Q12904 312 aaKnown RBP10.55□□□□□ -0.72
RTN3-202ENST00000339997 SASS6Q6UVJ0 657 aa10.55□□□□□ -0.72
RTN3-202ENST00000339997 ESPNB1AK53 854 aa10.54□□□□□ -0.72
RTN3-202ENST00000339997 CPLX1O14810 134 aa10.54□□□□□ -0.72
RTN3-202ENST00000339997 MARCH6O60337 910 aa10.54□□□□□ -0.72
RTN3-202ENST00000339997 CCDC18Q5T9S5 1454 aa10.54□□□□□ -0.72
RTN3-202ENST00000339997 IFIT2P09913 472 aaKnown RBP10.54□□□□□ -0.72
RTN3-202ENST00000339997 GRPEL1Q9HAV7 217 aa10.54□□□□□ -0.72
RTN3-202ENST00000339997 TRHP20396 242 aaPredicted RBP10.54□□□□□ -0.72
RTN3-202ENST00000339997 INTS3Q68E01 1043 aaKnown RBP10.53□□□□□ -0.72
RTN3-202ENST00000339997 FAM177A1Q8N128 213 aaPredicted RBP10.53□□□□□ -0.72
RTN3-202ENST00000339997 PDILTQ8N807 584 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 SDF4Q9BRK5 362 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 LMOD3Q0VAK6 560 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 MNS1Q8NEH6 495 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 CCDC34Q96HJ3 373 aa10.53□□□□□ -0.72
RTN3-202ENST00000339997 MAP4K4O95819 1239 aaPredicted RBP10.53□□□□□ -0.72
RTN3-202ENST00000339997 RUNDC1Q96C34 613 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms