RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ESF1Q9H501 851 aaKnown RBP15.28■□□□□ 0.04
USP1-201ENST00000339950 MAGI1Q96QZ7 1491 aaPredicted RBP15.27■□□□□ 0.04
USP1-201ENST00000339950 ERBINQ96RT1 1412 aa15.27■□□□□ 0.04
USP1-201ENST00000339950 GLIPR1L2Q4G1C9 344 aa15.27■□□□□ 0.04
USP1-201ENST00000339950 SPATA31E1Q6ZUB1 1445 aa15.27■□□□□ 0.04
USP1-201ENST00000339950 IFT140Q96RY7 1462 aa15.27■□□□□ 0.03
USP1-201ENST00000339950 HMOX1P09601 288 aa15.27■□□□□ 0.03
USP1-201ENST00000339950 SCAPERQ9BY12 1400 aa15.27■□□□□ 0.03
USP1-201ENST00000339950 RAPGEF3O95398 923 aa15.26■□□□□ 0.03
USP1-201ENST00000339950 BECN1Q14457 450 aa15.26■□□□□ 0.03
USP1-201ENST00000339950 ATP10BO94823 1461 aa15.26■□□□□ 0.03
USP1-201ENST00000339950 DUSP27Q5VZP5 1158 aa15.25■□□□□ 0.03
USP1-201ENST00000339950 NAP1L5Q96NT1 182 aaPredicted RBP15.25■□□□□ 0.03
USP1-201ENST00000339950 KIF21AQ7Z4S6 1674 aa15.24■□□□□ 0.03
USP1-201ENST00000339950 NCLP19338 710 aaKnown RBP15.24■□□□□ 0.03
USP1-201ENST00000339950 DISP1Q96F81 1524 aa15.24■□□□□ 0.03
USP1-201ENST00000339950 IGHDP01880 384 aa15.24■□□□□ 0.03
USP1-201ENST00000339950 SAMD9Q5K651 1589 aa15.23■□□□□ 0.03
USP1-201ENST00000339950 C1orf115Q9H7X2 142 aa15.23■□□□□ 0.03
USP1-201ENST00000339950 WDR62O43379 1518 aa15.23■□□□□ 0.03
USP1-201ENST00000339950 E9PSI1 815 aa15.23■□□□□ 0.03
USP1-201ENST00000339950 SYNJ2O15056 1496 aa15.22■□□□□ 0.03
USP1-201ENST00000339950 THUMPD2Q9BTF0 503 aaKnown RBP15.22■□□□□ 0.03
USP1-201ENST00000339950 PLEKHH1Q9ULM0 1364 aa15.22■□□□□ 0.03
USP1-201ENST00000339950 MS4A1P11836 297 aa15.21■□□□□ 0.02
USP1-201ENST00000339950 LNPKQ9C0E8 428 aa15.21■□□□□ 0.02
USP1-201ENST00000339950 GSE1Q14687 1217 aa15.2■□□□□ 0.02
USP1-201ENST00000339950 KIF14Q15058 1648 aa15.2■□□□□ 0.02
USP1-201ENST00000339950 SLFN5Q08AF3 891 aa15.2■□□□□ 0.02
USP1-201ENST00000339950 CYB5RLQ6IPT4 315 aa15.19■□□□□ 0.02
USP1-201ENST00000339950 ZNF428Q96B54 188 aa15.19■□□□□ 0.02
USP1-201ENST00000339950 SEC24BO95487 1268 aa15.18■□□□□ 0.02
USP1-201ENST00000339950 EXOSC9Q06265 439 aaKnown RBP15.18■□□□□ 0.02
USP1-201ENST00000339950 AMER1Q5JTC6 1135 aaPredicted RBP15.18■□□□□ 0.02
USP1-201ENST00000339950 FOXD4L5Q5VV16 416 aaPredicted RBP15.18■□□□□ 0.02
USP1-201ENST00000339950 FOXD4L4Q8WXT5 416 aaPredicted RBP15.18■□□□□ 0.02
USP1-201ENST00000339950 WWC1Q8IX03 1113 aa15.17■□□□□ 0.02
USP1-201ENST00000339950 CARD14Q9BXL6 1004 aa15.17■□□□□ 0.02
USP1-201ENST00000339950 RIPK4P57078 832 aa15.17■□□□□ 0.02
USP1-201ENST00000339950 PDZRN3Q9UPQ7 1066 aa15.17■□□□□ 0.02
USP1-201ENST00000339950 NOL8Q76FK4 1167 aaKnown RBP15.16■□□□□ 0.02
USP1-201ENST00000339950 NECTIN2Q92692 538 aa15.16■□□□□ 0.02
USP1-201ENST00000339950 RWDD1Q9H446 243 aaPredicted RBP15.16■□□□□ 0.02
USP1-201ENST00000339950 ABCA5Q8WWZ7 1642 aa15.16■□□□□ 0.02
USP1-201ENST00000339950 RNF123Q5XPI4 1314 aa15.16■□□□□ 0.02
USP1-201ENST00000339950 RAPGEF6Q8TEU7 1601 aa15.15■□□□□ 0.02
USP1-201ENST00000339950 HSP90AB1P08238 724 aaKnown RBP15.15■□□□□ 0.02
USP1-201ENST00000339950 FOXD4L6Q3SYB3 417 aaPredicted RBP15.15■□□□□ 0.02
USP1-201ENST00000339950 FOXD4L3Q6VB84 417 aaPredicted RBP15.15■□□□□ 0.02
USP1-201ENST00000339950 LRRIQ1Q96JM4 1722 aa15.14■□□□□ 0.01
USP1-201ENST00000339950 ANKRD45Q5TZF3 282 aa15.14■□□□□ 0.01
USP1-201ENST00000339950 RUNDC1Q96C34 613 aa15.14■□□□□ 0.01
USP1-201ENST00000339950 ARID3AQ99856 593 aa15.14■□□□□ 0.01
USP1-201ENST00000339950 EIF3AQ14152 1382 aaKnown RBP15.14■□□□□ 0.01
USP1-201ENST00000339950 CCDC141Q6ZP82 1450 aa15.14■□□□□ 0.01
USP1-201ENST00000339950 RLBP1P12271 317 aa15.13■□□□□ 0.01
USP1-201ENST00000339950 MYH16Q9H6N6 1097 aa15.13■□□□□ 0.01
USP1-201ENST00000339950 PRAG1Q86YV5 1406 aa15.12■□□□□ 0.01
USP1-201ENST00000339950 CGNL1Q0VF96 1302 aa15.12■□□□□ 0.01
USP1-201ENST00000339950 SLC4A10Q6U841 1118 aa15.12■□□□□ 0.01
USP1-201ENST00000339950 PARD3Q8TEW0 1356 aa15.12■□□□□ 0.01
USP1-201ENST00000339950 KIAA0556O60303 1618 aa15.12■□□□□ 0.01
USP1-201ENST00000339950 ADAMTS12P58397 1594 aa15.11■□□□□ 0.01
USP1-201ENST00000339950 ZKSCAN2Q63HK3 967 aa15.11■□□□□ 0.01
USP1-201ENST00000339950 LMOD2Q6P5Q4 547 aa15.11■□□□□ 0.01
USP1-201ENST00000339950 DZIP1LQ8IYY4 767 aaKnown RBP15.11■□□□□ 0.01
USP1-201ENST00000339950 LTV1Q96GA3 475 aaPredicted RBP15.11■□□□□ 0.01
USP1-201ENST00000339950 PRAM1Q96QH2 718 aa15.11■□□□□ 0.01
USP1-201ENST00000339950 PCDHB15Q9Y5E8 787 aa15.11■□□□□ 0.01
USP1-201ENST00000339950 LRPPRCP42704 1394 aaKnown RBP15.1■□□□□ 0.01
USP1-201ENST00000339950 TRAPPC8Q9Y2L5 1435 aa15.1■□□□□ 0.01
USP1-201ENST00000339950 SYCP2Q9BX26 1530 aa15.1■□□□□ 0.01
USP1-201ENST00000339950 RALGAPBQ86X10 1494 aa15.1■□□□□ 0.01
USP1-201ENST00000339950 USP35Q9P2H5 1018 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 GCC2Q8IWJ2 1684 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 DNMT1P26358 1616 aaKnown RBP15.09■□□□□ 0.01
USP1-201ENST00000339950 DCTN1Q14203 1278 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 PMFBP1Q8TBY8 1022 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 HDGFL2Q7Z4V5 671 aaPredicted RBP15.09■□□□□ 0.01
USP1-201ENST00000339950 WAPLQ7Z5K2 1190 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 HSCBQ8IWL3 235 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 CABP1Q9NZU7 370 aa15.09■□□□□ 0.01
USP1-201ENST00000339950 NOB1Q9ULX3 412 aaKnown RBP15.08■□□□□ 0
USP1-201ENST00000339950 NSD3Q9BZ95 1437 aa15.08■□□□□ 0
USP1-201ENST00000339950 NUTM2GQ5VZR2 741 aa15.08■□□□□ 0
USP1-201ENST00000339950 FBXO31Q5XUX0 539 aaPredicted RBP15.08■□□□□ 0
USP1-201ENST00000339950 TAOK2Q9UL54 1235 aa15.07■□□□□ 0
USP1-201ENST00000339950 BCORL1Q5H9F3 1711 aa15.07■□□□□ 0
USP1-201ENST00000339950 C8orf34Q49A92 452 aa15.07■□□□□ 0
USP1-201ENST00000339950 EVC2Q86UK5 1308 aa15.07■□□□□ 0
USP1-201ENST00000339950 RARSP54136 660 aaKnown RBP15.06■□□□□ 0
USP1-201ENST00000339950 FAM135AQ9P2D6 1515 aa15.06■□□□□ 0
USP1-201ENST00000339950 PRKAR2BP31323 418 aa15.06■□□□□ 0
USP1-201ENST00000339950 TRIM44Q96DX7 344 aaPredicted RBP15.06■□□□□ 0
USP1-201ENST00000339950 A2MP01023 1474 aa15.06■□□□□ 0
USP1-201ENST00000339950 RRS1Q15050 365 aaKnown RBP15.05■□□□□ 0
USP1-201ENST00000339950 TARBP1Q13395 1621 aaKnown RBP15.05■□□□□ -0
USP1-201ENST00000339950 DIAPH1O60610 1272 aaKnown RBP15.04■□□□□ -0
USP1-201ENST00000339950 ANP32BQ92688 251 aaKnown RBP15.04■□□□□ -0
USP1-201ENST00000339950 TERF2IPQ9NYB0 399 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms