RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 SPDYE4A6NLX3 237 aa15.59■□□□□ 0.09
USP47-202ENST00000339865 GOLGA6L7A0A1B0GV03 622 aa15.59■□□□□ 0.09
USP47-202ENST00000339865 CCDC43Q96MW1 224 aaKnown RBP15.59■□□□□ 0.09
USP47-202ENST00000339865 ANKRD45Q5TZF3 282 aa15.59■□□□□ 0.09
USP47-202ENST00000339865 CCDC97Q96F63 343 aaPredicted RBP15.59■□□□□ 0.09
USP47-202ENST00000339865 SYTL4Q96C24 671 aaPredicted RBP15.58■□□□□ 0.08
USP47-202ENST00000339865 CPLX2Q6PUV4 134 aaKnown RBP15.58■□□□□ 0.08
USP47-202ENST00000339865 HDAC5Q9UQL6 1122 aa15.58■□□□□ 0.08
USP47-202ENST00000339865 FOSBP53539 338 aa15.57■□□□□ 0.08
USP47-202ENST00000339865 RBM25P49756 843 aaKnown RBP15.57■□□□□ 0.08
USP47-202ENST00000339865 CHMP4CQ96CF2 233 aa15.57■□□□□ 0.08
USP47-202ENST00000339865 GOLGA6L10A6NI86 522 aa15.56■□□□□ 0.08
USP47-202ENST00000339865 NASPP49321 788 aaPredicted RBP15.56■□□□□ 0.08
USP47-202ENST00000339865 CCER2I3L3R5 266 aa15.56■□□□□ 0.08
USP47-202ENST00000339865 NF2P35240 595 aa15.56■□□□□ 0.08
USP47-202ENST00000339865 ZCCHC6Q5VYS8 1495 aaKnown RBP15.55■□□□□ 0.08
USP47-202ENST00000339865 STK26Q9P289 416 aa15.55■□□□□ 0.08
USP47-202ENST00000339865 FAM161AQ3B820 660 aa15.54■□□□□ 0.08
USP47-202ENST00000339865 GIMAP7Q8NHV1 300 aa15.54■□□□□ 0.08
USP47-202ENST00000339865 CPLX1O14810 134 aa15.54■□□□□ 0.08
USP47-202ENST00000339865 RSF1Q96T23 1441 aaPredicted RBP15.54■□□□□ 0.08
USP47-202ENST00000339865 DHX16O60231 1041 aaKnown RBP15.53■□□□□ 0.08
USP47-202ENST00000339865 VPS37CA5D8V6 355 aaPredicted RBP15.52■□□□□ 0.08
USP47-202ENST00000339865 CCDC146Q8IYE0 955 aa15.52■□□□□ 0.08
USP47-202ENST00000339865 CLIP1P30622 1438 aa15.52■□□□□ 0.08
USP47-202ENST00000339865 CGNL1Q0VF96 1302 aa15.52■□□□□ 0.08
USP47-202ENST00000339865 ERICH4A6NGS2 130 aa15.52■□□□□ 0.08
USP47-202ENST00000339865 CHMP4AQ9BY43 222 aa15.52■□□□□ 0.08
USP47-202ENST00000339865 TMEM132AQ24JP5 1023 aa15.52■□□□□ 0.07
USP47-202ENST00000339865 NAT10Q9H0A0 1025 aaKnown RBP15.52■□□□□ 0.07
USP47-202ENST00000339865 OLFM4Q6UX06 510 aa15.52■□□□□ 0.07
USP47-202ENST00000339865 TAX1BP1Q86VP1 789 aa15.52■□□□□ 0.07
USP47-202ENST00000339865 BCCIPQ9P287 314 aaKnown RBP eCLIP15.52■□□□□ 0.07
USP47-202ENST00000339865 CCDC39Q9UFE4 941 aa15.52■□□□□ 0.07
USP47-202ENST00000339865 PDE4AP27815 886 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 CFDP1Q9UEE9 299 aaPredicted RBP15.51■□□□□ 0.07
USP47-202ENST00000339865 CENPJQ9HC77 1338 aaPredicted RBP15.51■□□□□ 0.07
USP47-202ENST00000339865 USP8P40818 1118 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 AEBP1Q8IUX7 1158 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 PLEKHD1A6NEE1 506 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 GOLGA6L10A0A0M3HER8 536 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 ERLIN2O94905 339 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 MAP3K9P80192 1104 aa15.51■□□□□ 0.07
USP47-202ENST00000339865 HDGFL2Q7Z4V5 671 aaPredicted RBP15.51■□□□□ 0.07
USP47-202ENST00000339865 ANO2Q9NQ90 1003 aa15.5■□□□□ 0.07
USP47-202ENST00000339865 AMOTL1Q8IY63 956 aa15.5■□□□□ 0.07
USP47-202ENST00000339865 RALBP1Q15311 655 aa15.5■□□□□ 0.07
USP47-202ENST00000339865 MYCNP04198 464 aaPredicted RBP15.49■□□□□ 0.07
USP47-202ENST00000339865 FOXD1Q16676 465 aa15.49■□□□□ 0.07
USP47-202ENST00000339865 RNF214Q8ND24 703 aa15.49■□□□□ 0.07
USP47-202ENST00000339865 ZNF526Q8TF50 670 aaPredicted RBP15.49■□□□□ 0.07
USP47-202ENST00000339865 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.49■□□□□ 0.07
USP47-202ENST00000339865 LMOD3Q0VAK6 560 aa15.49■□□□□ 0.07
USP47-202ENST00000339865 NFXL1Q6ZNB6 911 aa15.48■□□□□ 0.07
USP47-202ENST00000339865 BRPF1P55201 1214 aaPredicted RBP15.48■□□□□ 0.07
USP47-202ENST00000339865 ZKSCAN1P17029 563 aaPredicted RBP15.48■□□□□ 0.07
USP47-202ENST00000339865 TRIM5Q9C035 493 aa15.48■□□□□ 0.07
USP47-202ENST00000339865 CCDC73Q6ZRK6 1079 aa15.47■□□□□ 0.07
USP47-202ENST00000339865 CENPQQ7L2Z9 268 aaPredicted RBP15.47■□□□□ 0.07
USP47-202ENST00000339865 TICAM2Q86XR7 235 aa15.47■□□□□ 0.07
USP47-202ENST00000339865 ANKRD18AQ8IVF6 992 aa15.47■□□□□ 0.07
USP47-202ENST00000339865 EZRP15311 586 aaKnown RBP15.47■□□□□ 0.07
USP47-202ENST00000339865 RSPH4AQ5TD94 716 aa15.47■□□□□ 0.07
USP47-202ENST00000339865 LRRFIP1Q32MZ4 808 aaKnown RBP15.47■□□□□ 0.07
USP47-202ENST00000339865 SMC2O95347 1197 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 TRDNQ13061 729 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 NOL10Q9BSC4 688 aaKnown RBP15.46■□□□□ 0.07
USP47-202ENST00000339865 FAM193AP78312 1265 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 SPC24Q8NBT2 197 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 SMC3Q9UQE7 1217 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 WWC2Q6AWC2 1192 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 GPATCH11Q8N954 259 aa15.46■□□□□ 0.07
USP47-202ENST00000339865 REC8O95072 547 aa15.46■□□□□ 0.06
USP47-202ENST00000339865 LTV1Q96GA3 475 aaPredicted RBP15.45■□□□□ 0.06
USP47-202ENST00000339865 SDF4Q9BRK5 362 aa15.45■□□□□ 0.06
USP47-202ENST00000339865 RUFY2Q8WXA3 655 aa15.45■□□□□ 0.06
USP47-202ENST00000339865 CHMP5Q9NZZ3 219 aa15.45■□□□□ 0.06
USP47-202ENST00000339865 ERICH2A1L162 156 aa15.44■□□□□ 0.06
USP47-202ENST00000339865 HDGFP51858 240 aaKnown RBP15.44■□□□□ 0.06
USP47-202ENST00000339865 BCL2L13Q9BXK5 485 aa15.44■□□□□ 0.06
USP47-202ENST00000339865 SAFBQ15424 915 aaKnown RBP eCLIP15.43■□□□□ 0.06
USP47-202ENST00000339865 SMARCE1Q969G3 411 aa15.43■□□□□ 0.06
USP47-202ENST00000339865 SYCP1Q15431 976 aa15.43■□□□□ 0.06
USP47-202ENST00000339865 FAM177A1Q8N128 213 aaPredicted RBP15.43■□□□□ 0.06
USP47-202ENST00000339865 GBP2P32456 591 aaPredicted RBP15.43■□□□□ 0.06
USP47-202ENST00000339865 TMEM87AQ8NBN3 555 aa15.43■□□□□ 0.06
USP47-202ENST00000339865 FMNL2Q96PY5 1086 aa15.42■□□□□ 0.06
USP47-202ENST00000339865 NUTM2FA1L443 756 aa15.42■□□□□ 0.06
USP47-202ENST00000339865 PLIN1O60240 522 aa15.41■□□□□ 0.06
USP47-202ENST00000339865 NUCB2P80303 420 aa15.41■□□□□ 0.06
USP47-202ENST00000339865 HMGN5P82970 282 aaKnown RBP15.41■□□□□ 0.06
USP47-202ENST00000339865 IPO4Q8TEX9 1081 aaKnown RBP15.41■□□□□ 0.06
USP47-202ENST00000339865 VPS37DQ86XT2 251 aa15.41■□□□□ 0.06
USP47-202ENST00000339865 EIF3JO75822 258 aaKnown RBP15.41■□□□□ 0.06
USP47-202ENST00000339865 NGEFQ8N5V2 710 aa15.41■□□□□ 0.06
USP47-202ENST00000339865 HSPA5P11021 654 aaKnown RBP15.4■□□□□ 0.06
USP47-202ENST00000339865 MRE11P49959 708 aa15.4■□□□□ 0.06
USP47-202ENST00000339865 RNF20Q5VTR2 975 aa15.4■□□□□ 0.06
USP47-202ENST00000339865 LRRCC1Q9C099 1032 aa15.4■□□□□ 0.06
USP47-202ENST00000339865 CCDC181Q5TID7 509 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms