RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 MIA2Q96PC5 1412 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.67□□□□□ -1.34
PTPRB-202ENST00000334414 OLFM4Q6UX06 510 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 CALCOCO1Q9P1Z2 691 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.67□□□□□ -1.34
PTPRB-202ENST00000334414 DCAF11Q8TEB1 546 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 TSPY26PQ9H489 355 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 CCDC73Q6ZRK6 1079 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 ZKSCAN2Q63HK3 967 aa6.67□□□□□ -1.34
PTPRB-202ENST00000334414 CARMIL2Q6F5E8 1435 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 PDCP20941 246 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 PSMA5P28066 241 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 GBP3Q9H0R5 595 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 MCM5P33992 734 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 GIMAP7Q8NHV1 300 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 UBE2Q2Q8WVN8 375 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 GOLGA6L10A0A0M3HER8 536 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 DYDC1Q8WWB3 177 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 PLEKHH1Q9ULM0 1364 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 NFKBIBQ15653 356 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 SYNE3Q6ZMZ3 975 aa6.66□□□□□ -1.34
PTPRB-202ENST00000334414 CWC22Q9HCG8 908 aaKnown RBP6.66□□□□□ -1.34
PTPRB-202ENST00000334414 ZBTB7CA1YPR0 619 aa6.65□□□□□ -1.34
PTPRB-202ENST00000334414 AMOTL1Q8IY63 956 aa6.65□□□□□ -1.34
PTPRB-202ENST00000334414 DACH1Q9UI36 760 aa6.65□□□□□ -1.34
PTPRB-202ENST00000334414 AKAP17AQ02040 695 aaKnown RBP6.65□□□□□ -1.34
PTPRB-202ENST00000334414 HSP90AB4PQ58FF6 505 aa6.65□□□□□ -1.34
PTPRB-202ENST00000334414 GORABQ5T7V8 394 aa6.65□□□□□ -1.34
PTPRB-202ENST00000334414 BRMS1Q9HCU9 246 aa6.65□□□□□ -1.34
PTPRB-202ENST00000334414 TULP1O00294 542 aaPredicted RBP6.65□□□□□ -1.35
PTPRB-202ENST00000334414 CBFA2T2O43439 604 aa6.65□□□□□ -1.35
PTPRB-202ENST00000334414 PDCL3Q9H2J4 239 aa6.65□□□□□ -1.35
PTPRB-202ENST00000334414 POTEB2H3BUK9 544 aa6.65□□□□□ -1.35
PTPRB-202ENST00000334414 CCDC7Q96M83 1385 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 PRKCSHP14314 528 aaPredicted RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 RSPH4AQ5TD94 716 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 CGNQ9P2M7 1197 aaKnown RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 BRD4O60885 1362 aaPredicted RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 TMX4Q9H1E5 349 aaPredicted RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 MICALCLQ6ZW33 695 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 BICD2Q8TD16 824 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 KIF21BO75037 1637 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 STAC3Q96MF2 364 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 CIZ1Q9ULV3 898 aaPredicted RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 PATL2C9JE40 543 aaKnown RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 ERC2O15083 957 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 GBP2P32456 591 aaPredicted RBP6.64□□□□□ -1.35
PTPRB-202ENST00000334414 RGL3Q3MIN7 710 aa6.64□□□□□ -1.35
PTPRB-202ENST00000334414 POLA1P09884 1462 aaPredicted RBP6.63□□□□□ -1.35
PTPRB-202ENST00000334414 DNAJC2Q99543 621 aaKnown RBP6.63□□□□□ -1.35
PTPRB-202ENST00000334414 SHTN1A0MZ66 631 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 MAP9Q49MG5 647 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 CCDC112Q8NEF3 446 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 SLC26A8Q96RN1 970 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 SIN3AQ96ST3 1273 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 R3HCC1Q9Y3T6 440 aaKnown RBP6.63□□□□□ -1.35
PTPRB-202ENST00000334414 CCDC192P0DO97 292 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 HIP1O00291 1037 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 CDC45O75419 566 aa6.63□□□□□ -1.35
PTPRB-202ENST00000334414 SRPK2P78362 688 aaKnown RBP6.63□□□□□ -1.35
PTPRB-202ENST00000334414 U2AF1L5P0DN76 240 aaPredicted RBP6.62□□□□□ -1.35
PTPRB-202ENST00000334414 U2AF1Q01081 240 aaKnown RBP eCLIP6.62□□□□□ -1.35
PTPRB-202ENST00000334414 XBP1P17861 261 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 EZRP15311 586 aaKnown RBP6.62□□□□□ -1.35
PTPRB-202ENST00000334414 SMC3Q9UQE7 1217 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 CARMIL1Q5VZK9 1371 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 USP47Q96K76 1375 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 AEBP1Q8IUX7 1158 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 ZNF396Q96N95 335 aaPredicted RBP6.62□□□□□ -1.35
PTPRB-202ENST00000334414 UQCRHLA0A096LP55 91 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 UQCRHP07919 91 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 CUX2O14529 1486 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 DHX57Q6P158 1386 aaKnown RBP6.62□□□□□ -1.35
PTPRB-202ENST00000334414 FILIP1LQ4L180 1135 aa6.62□□□□□ -1.35
PTPRB-202ENST00000334414 AXDND1Q5T1B0 1012 aaPredicted RBP6.62□□□□□ -1.35
PTPRB-202ENST00000334414 SAFBQ15424 915 aaKnown RBP eCLIP6.61□□□□□ -1.35
PTPRB-202ENST00000334414 JMYQ8N9B5 988 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 PCMTD1Q96MG8 357 aaPredicted RBP6.61□□□□□ -1.35
PTPRB-202ENST00000334414 CT47B1P0C2W7 299 aaPredicted RBP6.61□□□□□ -1.35
PTPRB-202ENST00000334414 ZSCAN30Q86W11 494 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 FEZ1Q99689 392 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 C22orf23Q9BZE7 217 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 NF2P35240 595 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 SPATA24Q86W54 205 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 RAPGEF2Q9Y4G8 1499 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 MCTP1Q6DN14 999 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 LUZP1Q86V48 1076 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 DHX16O60231 1041 aaKnown RBP6.61□□□□□ -1.35
PTPRB-202ENST00000334414 KINO60870 393 aaKnown RBP6.61□□□□□ -1.35
PTPRB-202ENST00000334414 API5Q9BZZ5 524 aaKnown RBP6.61□□□□□ -1.35
PTPRB-202ENST00000334414 CTR9Q6PD62 1173 aa6.61□□□□□ -1.35
PTPRB-202ENST00000334414 CPLX1O14810 134 aa6.6□□□□□ -1.35
PTPRB-202ENST00000334414 TRAK2O60296 914 aa6.6□□□□□ -1.35
PTPRB-202ENST00000334414 NEMFO60524 1076 aa6.6□□□□□ -1.35
PTPRB-202ENST00000334414 PRM3Q9NNZ6 103 aa6.6□□□□□ -1.35
PTPRB-202ENST00000334414 LRRCC1Q9C099 1032 aa6.6□□□□□ -1.35
PTPRB-202ENST00000334414 PRKRIP1Q9H875 184 aaPredicted RBP6.6□□□□□ -1.35
PTPRB-202ENST00000334414 TCEAL9Q9UHQ7 104 aa6.6□□□□□ -1.35
PTPRB-202ENST00000334414 RBM33Q96EV2 1170 aaKnown RBP6.6□□□□□ -1.35
PTPRB-202ENST00000334414 DHX29Q7Z478 1369 aaKnown RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms