RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TNIKQ9UKE5 1360 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 RDXP35241 583 aaKnown RBP9.62□□□□□ -0.87
CIITA-201ENST00000324288 COG6Q9Y2V7 657 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 NFKBIBQ15653 356 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 BICD2Q8TD16 824 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 CTDP1Q9Y5B0 961 aaPredicted RBP9.62□□□□□ -0.87
CIITA-201ENST00000324288 DIAPH3Q9NSV4 1193 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 VPS37CA5D8V6 355 aaPredicted RBP9.62□□□□□ -0.87
CIITA-201ENST00000324288 MEX3CQ5U5Q3 659 aaKnown RBP9.62□□□□□ -0.87
CIITA-201ENST00000324288 FYB1O15117 783 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 H0YHG0 523 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 CAGE1Q8TC20 777 aa9.62□□□□□ -0.87
CIITA-201ENST00000324288 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.62□□□□□ -0.87
CIITA-201ENST00000324288 SYTL4Q96C24 671 aaPredicted RBP9.61□□□□□ -0.87
CIITA-201ENST00000324288 TRERF1Q96PN7 1200 aa9.61□□□□□ -0.87
CIITA-201ENST00000324288 MTMR7Q9Y216 660 aa9.61□□□□□ -0.87
CIITA-201ENST00000324288 CENPQQ7L2Z9 268 aaPredicted RBP9.61□□□□□ -0.87
CIITA-201ENST00000324288 RBM25P49756 843 aaKnown RBP9.61□□□□□ -0.87
CIITA-201ENST00000324288 RRP1P56182 461 aaKnown RBP9.61□□□□□ -0.87
CIITA-201ENST00000324288 TRAK1Q9UPV9 953 aa9.61□□□□□ -0.87
CIITA-201ENST00000324288 NFXL1Q6ZNB6 911 aa9.6□□□□□ -0.87
CIITA-201ENST00000324288 CCDC191Q8NCU4 936 aa9.6□□□□□ -0.87
CIITA-201ENST00000324288 TERF2IPQ9NYB0 399 aa9.6□□□□□ -0.87
CIITA-201ENST00000324288 KANK4Q5T7N3 995 aaPredicted RBP9.6□□□□□ -0.87
CIITA-201ENST00000324288 ARGLU1Q9NWB6 273 aaPredicted RBP9.6□□□□□ -0.87
CIITA-201ENST00000324288 CCDC39Q9UFE4 941 aa9.6□□□□□ -0.87
CIITA-201ENST00000324288 CAVIN1Q6NZI2 390 aaKnown RBP9.6□□□□□ -0.87
CIITA-201ENST00000324288 MPHOSPH9Q99550 1183 aa9.6□□□□□ -0.87
CIITA-201ENST00000324288 CHMP5Q9NZZ3 219 aa9.6□□□□□ -0.87
CIITA-201ENST00000324288 CWC15Q9P013 229 aaKnown RBP9.6□□□□□ -0.87
CIITA-201ENST00000324288 FHAD1B1AJZ9 1412 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 RAB3GAP2Q9H2M9 1393 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 CUX2O14529 1486 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 CCDC27Q2M243 656 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 SYNE3Q6ZMZ3 975 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 SPC24Q8NBT2 197 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 VPS37DQ86XT2 251 aa9.59□□□□□ -0.87
CIITA-201ENST00000324288 NOL10Q9BSC4 688 aaKnown RBP9.59□□□□□ -0.87
CIITA-201ENST00000324288 EVA1CP58658 441 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 SMC2O95347 1197 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 C1orf141Q5JVX7 400 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 KIF3AQ9Y496 699 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 CCDC43Q96MW1 224 aaKnown RBP9.58□□□□□ -0.88
CIITA-201ENST00000324288 CPLX1O14810 134 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 FAM193AP78312 1265 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 TRIM29Q14134 588 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 C9orf78Q9NZ63 289 aaPredicted RBP9.58□□□□□ -0.88
CIITA-201ENST00000324288 ABCC8Q09428 1581 aa9.58□□□□□ -0.88
CIITA-201ENST00000324288 CWC22Q9HCG8 908 aaKnown RBP9.57□□□□□ -0.88
CIITA-201ENST00000324288 ACBD3Q9H3P7 528 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 CENPHQ9H3R5 247 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 UQCRHLA0A096LP55 91 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 UQCRHP07919 91 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 AEBP1Q8IUX7 1158 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 LMOD3Q0VAK6 560 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 HSP90B2PQ58FF3 399 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 ZNF428Q96B54 188 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 IPO7O95373 1038 aaKnown RBP9.57□□□□□ -0.88
CIITA-201ENST00000324288 SASS6Q6UVJ0 657 aa9.57□□□□□ -0.88
CIITA-201ENST00000324288 CT47A1Q5JQC4 288 aaPredicted RBP9.57□□□□□ -0.88
CIITA-201ENST00000324288 RB1CC1Q8TDY2 1594 aa9.56□□□□□ -0.88
CIITA-201ENST00000324288 EID1Q9Y6B2 187 aa9.56□□□□□ -0.88
CIITA-201ENST00000324288 KIF3BO15066 747 aa9.56□□□□□ -0.88
CIITA-201ENST00000324288 SOGA1O94964 1423 aa9.56□□□□□ -0.88
CIITA-201ENST00000324288 C22orf23Q9BZE7 217 aa9.56□□□□□ -0.88
CIITA-201ENST00000324288 PANK3Q9H999 370 aa9.56□□□□□ -0.88
CIITA-201ENST00000324288 CARMIL1Q5VZK9 1371 aa9.55□□□□□ -0.88
CIITA-201ENST00000324288 HNRNPMP52272 730 aaKnown RBP eCLIP9.55□□□□□ -0.88
CIITA-201ENST00000324288 CCDC66A2RUB6 948 aa9.55□□□□□ -0.88
CIITA-201ENST00000324288 AXDND1Q5T1B0 1012 aaPredicted RBP9.55□□□□□ -0.88
CIITA-201ENST00000324288 ZFYVE27Q5T4F4 411 aa9.55□□□□□ -0.88
CIITA-201ENST00000324288 HDAC5Q9UQL6 1122 aa9.55□□□□□ -0.88
CIITA-201ENST00000324288 IFIT2P09913 472 aaKnown RBP9.55□□□□□ -0.88
CIITA-201ENST00000324288 SMC3Q9UQE7 1217 aa9.55□□□□□ -0.88
CIITA-201ENST00000324288 ANKRD20A12PQ8NF67 263 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 TRAK2O60296 914 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 ZFP91Q96JP5 570 aaPredicted RBP9.54□□□□□ -0.88
CIITA-201ENST00000324288 CCDC73Q6ZRK6 1079 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 AMOTL1Q8IY63 956 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 ZKSCAN2Q63HK3 967 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 ATP6V1DQ9Y5K8 247 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 STK11IPQ8N1F8 1099 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 MINK1Q8N4C8 1332 aaPredicted RBP9.54□□□□□ -0.88
CIITA-201ENST00000324288 WASHC2CQ9Y4E1 1318 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 PDE3BQ13370 1112 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 TTC5Q8N0Z6 440 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 TSPY26PQ9H489 355 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 TRIM5Q9C035 493 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 LNPKQ9C0E8 428 aa9.54□□□□□ -0.88
CIITA-201ENST00000324288 EPS15P42566 896 aa9.53□□□□□ -0.88
CIITA-201ENST00000324288 NLRP13Q86W25 1043 aa9.53□□□□□ -0.88
CIITA-201ENST00000324288 MRE11P49959 708 aa9.53□□□□□ -0.88
CIITA-201ENST00000324288 L3MBTL2Q969R5 705 aa9.53□□□□□ -0.88
CIITA-201ENST00000324288 ODF2Q5BJF6 829 aa9.53□□□□□ -0.88
CIITA-201ENST00000324288 LEKR1Q6ZMV7 388 aa9.53□□□□□ -0.88
CIITA-201ENST00000324288 HSP90AB2PQ58FF8 381 aa9.52□□□□□ -0.88
CIITA-201ENST00000324288 CT47B1P0C2W7 299 aaPredicted RBP9.52□□□□□ -0.88
CIITA-201ENST00000324288 COG3Q96JB2 828 aa9.52□□□□□ -0.89
CIITA-201ENST00000324288 ZKSCAN1P17029 563 aaPredicted RBP9.52□□□□□ -0.89
CIITA-201ENST00000324288 TEFQ10587 303 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms