RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 PPP4R2Q9NY27 417 aa21.67■■□□□ 1.06
USH1C-202ENST00000318024 POLR3GLQ9BT43 218 aa21.66■■□□□ 1.06
USH1C-202ENST00000318024 ADGRF5Q8IZF2 1346 aa21.66■■□□□ 1.06
USH1C-202ENST00000318024 NUTM2DQ5VT03 806 aaPredicted RBP21.65■■□□□ 1.06
USH1C-202ENST00000318024 ESF1Q9H501 851 aaKnown RBP21.65■■□□□ 1.06
USH1C-202ENST00000318024 PPP6R1Q9UPN7 881 aa21.64■■□□□ 1.06
USH1C-202ENST00000318024 TRPM1Q7Z4N2 1603 aa21.64■■□□□ 1.05
USH1C-202ENST00000318024 ZC3H13Q5T200 1668 aaKnown RBP21.64■■□□□ 1.05
USH1C-202ENST00000318024 KIF7Q2M1P5 1343 aa21.64■■□□□ 1.05
USH1C-202ENST00000318024 SYNMO15061 1565 aa21.63■■□□□ 1.05
USH1C-202ENST00000318024 CCDC7Q96M83 1385 aa21.63■■□□□ 1.05
USH1C-202ENST00000318024 SENP3Q9H4L4 574 aaPredicted RBP21.62■■□□□ 1.05
USH1C-202ENST00000318024 KIF1BO60333 1816 aa21.62■■□□□ 1.05
USH1C-202ENST00000318024 PRKRIP1Q9H875 184 aaPredicted RBP21.61■■□□□ 1.05
USH1C-202ENST00000318024 MROH2AA6NES4 1674 aa21.61■■□□□ 1.05
USH1C-202ENST00000318024 CFAP70Q5T0N1 1121 aa21.61■■□□□ 1.05
USH1C-202ENST00000318024 STAC3Q96MF2 364 aa21.6■■□□□ 1.05
USH1C-202ENST00000318024 SLC52A1Q9NWF4 448 aa21.6■■□□□ 1.05
USH1C-202ENST00000318024 PRKCSHP14314 528 aaPredicted RBP21.6■■□□□ 1.05
USH1C-202ENST00000318024 GPRASP1Q5JY77 1395 aa21.59■■□□□ 1.05
USH1C-202ENST00000318024 ZBED9Q6R2W3 1325 aa21.59■■□□□ 1.05
USH1C-202ENST00000318024 CLTCQ00610 1675 aaKnown RBP21.59■■□□□ 1.05
USH1C-202ENST00000318024 ADGRB3O60242 1522 aa21.59■■□□□ 1.05
USH1C-202ENST00000318024 POLR1AO95602 1720 aaPredicted RBP21.58■■□□□ 1.05
USH1C-202ENST00000318024 MADDQ8WXG6 1647 aa21.58■■□□□ 1.05
USH1C-202ENST00000318024 ZMYM3Q14202 1370 aa21.57■■□□□ 1.04
USH1C-202ENST00000318024 NEURL4Q96JN8 1562 aa21.56■■□□□ 1.04
USH1C-202ENST00000318024 PREX1Q8TCU6 1659 aa21.55■■□□□ 1.04
USH1C-202ENST00000318024 ERVK-7P63135 1459 aa21.55■■□□□ 1.04
USH1C-202ENST00000318024 STAG3Q9UJ98 1225 aa21.55■■□□□ 1.04
USH1C-202ENST00000318024 PLPPR3Q6T4P5 718 aa21.54■■□□□ 1.04
USH1C-202ENST00000318024 PIK3C2BO00750 1634 aa21.53■■□□□ 1.04
USH1C-202ENST00000318024 MYOM2P54296 1465 aa21.52■■□□□ 1.04
USH1C-202ENST00000318024 RPGRIP1LQ68CZ1 1315 aa21.52■■□□□ 1.03
USH1C-202ENST00000318024 CEBPAP49715 358 aaPredicted RBP21.51■■□□□ 1.03
USH1C-202ENST00000318024 TESK2Q96S53 571 aa21.49■■□□□ 1.03
USH1C-202ENST00000318024 VGFO15240 615 aaPredicted RBP21.49■■□□□ 1.03
USH1C-202ENST00000318024 TMEM132EQ6IEE7 984 aa21.48■■□□□ 1.03
USH1C-202ENST00000318024 B4GALNT3Q6L9W6 998 aa21.48■■□□□ 1.03
USH1C-202ENST00000318024 CNGB1Q14028 1251 aaPredicted RBP21.47■■□□□ 1.03
USH1C-202ENST00000318024 ERICH6Q7L0X2 663 aa21.47■■□□□ 1.03
USH1C-202ENST00000318024 MRS2Q9HD23 443 aa21.47■■□□□ 1.03
USH1C-202ENST00000318024 IFT172Q9UG01 1749 aa21.47■■□□□ 1.03
USH1C-202ENST00000318024 NRXN1Q9ULB1 1477 aa21.46■■□□□ 1.03
USH1C-202ENST00000318024 FAM9BQ8IZU0 186 aa21.46■■□□□ 1.03
USH1C-202ENST00000318024 C14orf93Q9H972 538 aaKnown RBP21.45■■□□□ 1.03
USH1C-202ENST00000318024 PIK3C2GO75747 1445 aa21.45■■□□□ 1.02
USH1C-202ENST00000318024 LAMC1P11047 1609 aa21.44■■□□□ 1.02
USH1C-202ENST00000318024 PPLO60437 1756 aa21.44■■□□□ 1.02
USH1C-202ENST00000318024 RNF123Q5XPI4 1314 aa21.44■■□□□ 1.02
USH1C-202ENST00000318024 SCAF11Q99590 1463 aaKnown RBP21.44■■□□□ 1.02
USH1C-202ENST00000318024 TMEM131LA2VDJ0 1609 aa21.44■■□□□ 1.02
USH1C-202ENST00000318024 SPATA31D1Q6ZQQ2 1576 aa21.44■■□□□ 1.02
USH1C-202ENST00000318024 DISP3Q9P2K9 1392 aa21.44■■□□□ 1.02
USH1C-202ENST00000318024 NEXMIFQ5QGS0 1516 aa21.43■■□□□ 1.02
USH1C-202ENST00000318024 SMG6Q86US8 1419 aaKnown RBP21.43■■□□□ 1.02
USH1C-202ENST00000318024 TRAK1Q9UPV9 953 aa21.43■■□□□ 1.02
USH1C-202ENST00000318024 MYO5BQ9ULV0 1848 aa21.41■■□□□ 1.02
USH1C-202ENST00000318024 TMF1P82094 1093 aa21.4■■□□□ 1.02
USH1C-202ENST00000318024 TNRQ92752 1358 aa21.39■■□□□ 1.02
USH1C-202ENST00000318024 A2ML1A8K2U0 1454 aa21.37■■□□□ 1.01
USH1C-202ENST00000318024 KIAA1210Q9ULL0 1709 aa21.37■■□□□ 1.01
USH1C-202ENST00000318024 IQGAP1P46940 1657 aa21.36■■□□□ 1.01
USH1C-202ENST00000318024 EIF3AQ14152 1382 aaKnown RBP21.36■■□□□ 1.01
USH1C-202ENST00000318024 STK26Q9P289 416 aa21.35■■□□□ 1.01
USH1C-202ENST00000318024 ZFYVE9O95405 1425 aa21.33■■□□□ 1
USH1C-202ENST00000318024 NOP58Q9Y2X3 529 aaKnown RBP21.33■■□□□ 1
USH1C-202ENST00000318024 DEKP35659 375 aaKnown RBP21.32■■□□□ 1
USH1C-202ENST00000318024 RIMS2Q9UQ26 1411 aa21.32■■□□□ 1
USH1C-202ENST00000318024 ADGRB1O14514 1584 aa21.32■■□□□ 1
USH1C-202ENST00000318024 NUDCQ9Y266 331 aa21.31■■□□□ 1
USH1C-202ENST00000318024 PAK3O75914 559 aaPredicted RBP21.3■■□□□ 1
USH1C-202ENST00000318024 CENPJQ9HC77 1338 aaPredicted RBP21.3■■□□□ 1
USH1C-202ENST00000318024 SAFB2Q14151 953 aaKnown RBP eCLIP21.29■■□□□ 1
USH1C-202ENST00000318024 SETBP1Q9Y6X0 1596 aa21.29■■□□□ 1
USH1C-202ENST00000318024 PANK3Q9H999 370 aa21.28■■□□□ 1
USH1C-202ENST00000318024 FER1L4A9Z1Z3 1794 aa21.26■□□□□ 0.99
USH1C-202ENST00000318024 C3P01024 1663 aa21.25■□□□□ 0.99
USH1C-202ENST00000318024 CDCA8Q53HL2 280 aa21.24■□□□□ 0.99
USH1C-202ENST00000318024 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.24■□□□□ 0.99
USH1C-202ENST00000318024 TMEM2Q9UHN6 1383 aa21.22■□□□□ 0.99
USH1C-202ENST00000318024 PER1O15534 1290 aaPredicted RBP21.22■□□□□ 0.99
USH1C-202ENST00000318024 ASXL1Q8IXJ9 1541 aa21.22■□□□□ 0.99
USH1C-202ENST00000318024 LTKP29376 864 aa21.21■□□□□ 0.99
USH1C-202ENST00000318024 HDGFP51858 240 aaKnown RBP21.21■□□□□ 0.99
USH1C-202ENST00000318024 ALKQ9UM73 1620 aa21.21■□□□□ 0.99
USH1C-202ENST00000318024 PNISRQ8TF01 805 aaKnown RBP21.2■□□□□ 0.98
USH1C-202ENST00000318024 PRAM1Q96QH2 718 aa21.2■□□□□ 0.98
USH1C-202ENST00000318024 TXNDC2Q86VQ3 553 aa21.19■□□□□ 0.98
USH1C-202ENST00000318024 YTHDC2Q9H6S0 1430 aaKnown RBP21.19■□□□□ 0.98
USH1C-202ENST00000318024 NLRP1Q9C000 1473 aa21.19■□□□□ 0.98
USH1C-202ENST00000318024 IPO9Q96P70 1041 aaKnown RBP21.19■□□□□ 0.98
USH1C-202ENST00000318024 SLC24A1O60721 1099 aa21.18■□□□□ 0.98
USH1C-202ENST00000318024 CC2D1BQ5T0F9 858 aaKnown RBP21.18■□□□□ 0.98
USH1C-202ENST00000318024 POGKQ9P215 609 aa21.18■□□□□ 0.98
USH1C-202ENST00000318024 UBR1Q8IWV7 1749 aa21.18■□□□□ 0.98
USH1C-202ENST00000318024 PTPRMP28827 1452 aa21.18■□□□□ 0.98
USH1C-202ENST00000318024 CCDC136Q96JN2 1154 aa21.17■□□□□ 0.98
USH1C-202ENST00000318024 LRPPRCP42704 1394 aaKnown RBP21.16■□□□□ 0.98
USH1C-202ENST00000318024 SBNO2Q9Y2G9 1366 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms