RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 CDCA8Q53HL2 280 aa28.94■■■□□ 2.22
SHMT1-201ENST00000316694 RTL5Q5HYW3 569 aaPredicted RBP28.93■■■□□ 2.22
SHMT1-201ENST00000316694 TRPM2O94759 1503 aa28.93■■■□□ 2.22
SHMT1-201ENST00000316694 PLEKHH1Q9ULM0 1364 aa28.92■■■□□ 2.22
SHMT1-201ENST00000316694 SCAF11Q99590 1463 aaKnown RBP28.92■■■□□ 2.22
SHMT1-201ENST00000316694 SPHKAPQ2M3C7 1700 aa28.92■■■□□ 2.22
SHMT1-201ENST00000316694 CEP152O94986 1710 aa28.9■■■□□ 2.22
SHMT1-201ENST00000316694 ARAP3Q8WWN8 1544 aa28.9■■■□□ 2.22
SHMT1-201ENST00000316694 SYNMO15061 1565 aa28.89■■■□□ 2.22
SHMT1-201ENST00000316694 FANCAO15360 1455 aa28.89■■■□□ 2.22
SHMT1-201ENST00000316694 CLTCL1P53675 1640 aa28.89■■■□□ 2.22
SHMT1-201ENST00000316694 KIF3BO15066 747 aa28.88■■■□□ 2.21
SHMT1-201ENST00000316694 DUSP27Q5VZP5 1158 aa28.87■■■□□ 2.21
SHMT1-201ENST00000316694 PTPRTO14522 1441 aa28.87■■■□□ 2.21
SHMT1-201ENST00000316694 ASXL1Q8IXJ9 1541 aa28.86■■■□□ 2.21
SHMT1-201ENST00000316694 SCAPERQ9BY12 1400 aa28.86■■■□□ 2.21
SHMT1-201ENST00000316694 ATP7AQ04656 1500 aa28.85■■■□□ 2.21
SHMT1-201ENST00000316694 DEPDC5O75140 1603 aa28.85■■■□□ 2.21
SHMT1-201ENST00000316694 GOLGA2Q08379 1002 aa28.85■■■□□ 2.21
SHMT1-201ENST00000316694 STAC3Q96MF2 364 aa28.83■■■□□ 2.21
SHMT1-201ENST00000316694 EIF3AQ14152 1382 aaKnown RBP28.82■■■□□ 2.2
SHMT1-201ENST00000316694 ABCA9Q8IUA7 1624 aa28.82■■■□□ 2.2
SHMT1-201ENST00000316694 CCDC146Q8IYE0 955 aa28.82■■■□□ 2.2
SHMT1-201ENST00000316694 ZNF521Q96K83 1311 aa28.82■■■□□ 2.2
SHMT1-201ENST00000316694 TET3O43151 1660 aa28.81■■■□□ 2.2
SHMT1-201ENST00000316694 KANK1Q14678 1352 aa28.81■■■□□ 2.2
SHMT1-201ENST00000316694 INO80Q9ULG1 1556 aaPredicted RBP28.81■■■□□ 2.2
SHMT1-201ENST00000316694 MYOM1P52179 1685 aa28.81■■■□□ 2.2
SHMT1-201ENST00000316694 ADGRL1O94910 1474 aa28.8■■■□□ 2.2
SHMT1-201ENST00000316694 LAS1LQ9Y4W2 734 aaKnown RBP28.8■■■□□ 2.2
SHMT1-201ENST00000316694 PIK3C2GO75747 1445 aa28.79■■■□□ 2.2
SHMT1-201ENST00000316694 KDM2BQ8NHM5 1336 aa28.77■■■□□ 2.2
SHMT1-201ENST00000316694 KDM5AP29375 1690 aaKnown RBP28.75■■■□□ 2.19
SHMT1-201ENST00000316694 VWDEQ8N2E2 1590 aa28.75■■■□□ 2.19
SHMT1-201ENST00000316694 CFAP70Q5T0N1 1121 aa28.75■■■□□ 2.19
SHMT1-201ENST00000316694 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.75■■■□□ 2.19
SHMT1-201ENST00000316694 UGGT1Q9NYU2 1555 aa28.75■■■□□ 2.19
SHMT1-201ENST00000316694 SLFN5Q08AF3 891 aa28.75■■■□□ 2.19
SHMT1-201ENST00000316694 CENPQQ7L2Z9 268 aaPredicted RBP28.74■■■□□ 2.19
SHMT1-201ENST00000316694 NPC1L1Q9UHC9 1359 aa28.73■■■□□ 2.19
SHMT1-201ENST00000316694 ASXL2Q76L83 1435 aa28.72■■■□□ 2.19
SHMT1-201ENST00000316694 APAF1O14727 1248 aa28.72■■■□□ 2.19
SHMT1-201ENST00000316694 MROH1Q8NDA8 1641 aa28.7■■■□□ 2.18
SHMT1-201ENST00000316694 KIAA1210Q9ULL0 1709 aa28.69■■■□□ 2.18
SHMT1-201ENST00000316694 ADGRF5Q8IZF2 1346 aa28.69■■■□□ 2.18
SHMT1-201ENST00000316694 NEFMP07197 916 aa28.69■■■□□ 2.18
SHMT1-201ENST00000316694 SPINK5Q9NQ38 1064 aaPredicted RBP28.69■■■□□ 2.18
SHMT1-201ENST00000316694 ERVK-7P63135 1459 aa28.66■■■□□ 2.18
SHMT1-201ENST00000316694 DDRGK1Q96HY6 314 aa28.66■■■□□ 2.18
SHMT1-201ENST00000316694 ABCA6Q8N139 1617 aa28.65■■■□□ 2.18
SHMT1-201ENST00000316694 CARD14Q9BXL6 1004 aa28.65■■■□□ 2.18
SHMT1-201ENST00000316694 MAP3K4Q9Y6R4 1608 aa28.65■■■□□ 2.18
SHMT1-201ENST00000316694 TRMT2AQ8IZ69 625 aaKnown RBP28.65■■■□□ 2.18
SHMT1-201ENST00000316694 KIDINS220Q9ULH0 1771 aa28.63■■■□□ 2.17
SHMT1-201ENST00000316694 NKTRP30414 1462 aaKnown RBP28.63■■■□□ 2.17
SHMT1-201ENST00000316694 SLC24A1O60721 1099 aa28.62■■■□□ 2.17
SHMT1-201ENST00000316694 BCAR3O75815 825 aa28.62■■■□□ 2.17
SHMT1-201ENST00000316694 MYOM2P54296 1465 aa28.61■■■□□ 2.17
SHMT1-201ENST00000316694 KIF1BO60333 1816 aa28.6■■■□□ 2.17
SHMT1-201ENST00000316694 PPM1GO15355 546 aaPredicted RBP28.6■■■□□ 2.17
SHMT1-201ENST00000316694 E9PSI1 815 aa28.59■■■□□ 2.17
SHMT1-201ENST00000316694 RGS3P49796 1198 aa28.59■■■□□ 2.17
SHMT1-201ENST00000316694 EFCAB6Q5THR3 1501 aa28.59■■■□□ 2.17
SHMT1-201ENST00000316694 FAM161AQ3B820 660 aa28.59■■■□□ 2.17
SHMT1-201ENST00000316694 DMRT2Q9Y5R5 561 aa28.58■■■□□ 2.17
SHMT1-201ENST00000316694 NEURL4Q96JN8 1562 aa28.58■■■□□ 2.17
SHMT1-201ENST00000316694 USP35Q9P2H5 1018 aa28.58■■■□□ 2.17
SHMT1-201ENST00000316694 PPRC1Q5VV67 1664 aaKnown RBP28.57■■■□□ 2.16
SHMT1-201ENST00000316694 CHGAP10645 457 aaKnown RBP28.57■■■□□ 2.16
SHMT1-201ENST00000316694 CFAP65Q6ZU64 1925 aaKnown RBP28.57■■■□□ 2.16
SHMT1-201ENST00000316694 MROH2AA6NES4 1674 aa28.56■■■□□ 2.16
SHMT1-201ENST00000316694 C8orf34Q49A92 452 aa28.55■■■□□ 2.16
SHMT1-201ENST00000316694 SLC4A3P48751 1232 aa28.55■■■□□ 2.16
SHMT1-201ENST00000316694 ZNF518AQ6AHZ1 1483 aa28.53■■■□□ 2.16
SHMT1-201ENST00000316694 DAXXQ9UER7 740 aaPredicted RBP28.53■■■□□ 2.16
SHMT1-201ENST00000316694 NPM1P06748 294 aaKnown RBP eCLIP28.52■■■□□ 2.16
SHMT1-201ENST00000316694 GGT6Q6P531 493 aa28.52■■■□□ 2.16
SHMT1-201ENST00000316694 IFT172Q9UG01 1749 aa28.52■■■□□ 2.16
SHMT1-201ENST00000316694 TNNT2P45379 298 aaPredicted RBP28.51■■■□□ 2.15
SHMT1-201ENST00000316694 CENPJQ9HC77 1338 aaPredicted RBP28.51■■■□□ 2.15
SHMT1-201ENST00000316694 NOS1P29475 1434 aa28.49■■■□□ 2.15
SHMT1-201ENST00000316694 TRAK1Q9UPV9 953 aa28.49■■■□□ 2.15
SHMT1-201ENST00000316694 NGEFQ8N5V2 710 aa28.48■■■□□ 2.15
SHMT1-201ENST00000316694 CANXP27824 592 aaKnown RBP28.47■■■□□ 2.15
SHMT1-201ENST00000316694 MORC1Q86VD1 984 aa28.47■■■□□ 2.15
SHMT1-201ENST00000316694 WWC1Q8IX03 1113 aa28.47■■■□□ 2.15
SHMT1-201ENST00000316694 POLR3AO14802 1390 aaPredicted RBP28.47■■■□□ 2.15
SHMT1-201ENST00000316694 NEUROD2Q15784 382 aa28.47■■■□□ 2.15
SHMT1-201ENST00000316694 NSD3Q9BZ95 1437 aa28.47■■■□□ 2.15
SHMT1-201ENST00000316694 CD109Q6YHK3 1445 aa28.46■■■□□ 2.15
SHMT1-201ENST00000316694 MYO3AQ8NEV4 1616 aa28.46■■■□□ 2.15
SHMT1-201ENST00000316694 LMTK2Q8IWU2 1503 aa28.46■■■□□ 2.15
SHMT1-201ENST00000316694 SBNO2Q9Y2G9 1366 aa28.46■■■□□ 2.15
SHMT1-201ENST00000316694 NRXN1Q9ULB1 1477 aa28.45■■■□□ 2.15
SHMT1-201ENST00000316694 SLC12A5Q9H2X9 1139 aa28.44■■■□□ 2.14
SHMT1-201ENST00000316694 NPATQ14207 1427 aa28.44■■■□□ 2.14
SHMT1-201ENST00000316694 IGHDP01880 384 aa28.44■■■□□ 2.14
SHMT1-201ENST00000316694 RRP7AQ9Y3A4 280 aaKnown RBP28.43■■■□□ 2.14
SHMT1-201ENST00000316694 PANK1Q8TE04 598 aa28.42■■■□□ 2.14
SHMT1-201ENST00000316694 CGNL1Q0VF96 1302 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms