RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 ST20-MTHFSA0A0A6YYL1 179 aa31.94■■■□□ 2.7
PTX3-201ENST00000295927 ADGRF5Q8IZF2 1346 aa31.93■■■□□ 2.7
PTX3-201ENST00000295927 KIF7Q2M1P5 1343 aa31.92■■■□□ 2.7
PTX3-201ENST00000295927 NRXN1Q9ULB1 1477 aa31.92■■■□□ 2.7
PTX3-201ENST00000295927 RPGRIP1LQ68CZ1 1315 aa31.92■■■□□ 2.7
PTX3-201ENST00000295927 ESF1Q9H501 851 aaKnown RBP31.92■■■□□ 2.7
PTX3-201ENST00000295927 SPATA31D1Q6ZQQ2 1576 aa31.91■■■□□ 2.7
PTX3-201ENST00000295927 MYO5BQ9ULV0 1848 aa31.9■■■□□ 2.7
PTX3-201ENST00000295927 TMEM131LA2VDJ0 1609 aa31.89■■■□□ 2.7
PTX3-201ENST00000295927 ZMYM3Q14202 1370 aa31.87■■■□□ 2.69
PTX3-201ENST00000295927 IQGAP1P46940 1657 aa31.87■■■□□ 2.69
PTX3-201ENST00000295927 NEXMIFQ5QGS0 1516 aa31.86■■■□□ 2.69
PTX3-201ENST00000295927 CFAP70Q5T0N1 1121 aa31.83■■■□□ 2.69
PTX3-201ENST00000295927 PIK3C2GO75747 1445 aa31.8■■■□□ 2.68
PTX3-201ENST00000295927 SCAF11Q99590 1463 aaKnown RBP31.79■■■□□ 2.68
PTX3-201ENST00000295927 VGFO15240 615 aaPredicted RBP31.76■■■□□ 2.67
PTX3-201ENST00000295927 ANP32CO43423 234 aa31.75■■■□□ 2.67
PTX3-201ENST00000295927 POLR3GLQ9BT43 218 aa31.74■■■□□ 2.67
PTX3-201ENST00000295927 SETBP1Q9Y6X0 1596 aa31.74■■■□□ 2.67
PTX3-201ENST00000295927 NUTM2DQ5VT03 806 aaPredicted RBP31.73■■■□□ 2.67
PTX3-201ENST00000295927 TESK2Q96S53 571 aa31.73■■■□□ 2.67
PTX3-201ENST00000295927 ZFYVE9O95405 1425 aa31.73■■■□□ 2.67
PTX3-201ENST00000295927 C14orf93Q9H972 538 aaKnown RBP31.72■■■□□ 2.67
PTX3-201ENST00000295927 STAG3Q9UJ98 1225 aa31.71■■■□□ 2.67
PTX3-201ENST00000295927 FER1L4A9Z1Z3 1794 aa31.71■■■□□ 2.67
PTX3-201ENST00000295927 A2ML1A8K2U0 1454 aa31.69■■■□□ 2.66
PTX3-201ENST00000295927 TNRQ92752 1358 aa31.67■■■□□ 2.66
PTX3-201ENST00000295927 EIF3AQ14152 1382 aaKnown RBP31.67■■■□□ 2.66
PTX3-201ENST00000295927 ADGRB1O14514 1584 aa31.65■■■□□ 2.66
PTX3-201ENST00000295927 C3P01024 1663 aa31.65■■■□□ 2.66
PTX3-201ENST00000295927 DISP3Q9P2K9 1392 aa31.64■■■□□ 2.66
PTX3-201ENST00000295927 TMF1P82094 1093 aa31.62■■■□□ 2.65
PTX3-201ENST00000295927 CEBPAP49715 358 aaPredicted RBP31.59■■■□□ 2.65
PTX3-201ENST00000295927 MYO3AQ8NEV4 1616 aa31.58■■■□□ 2.65
PTX3-201ENST00000295927 TMEM132EQ6IEE7 984 aa31.58■■■□□ 2.65
PTX3-201ENST00000295927 YTHDC1Q96MU7 727 aaKnown RBP31.58■■■□□ 2.65
PTX3-201ENST00000295927 KDM5AP29375 1690 aaKnown RBP31.58■■■□□ 2.65
PTX3-201ENST00000295927 RIMS2Q9UQ26 1411 aa31.57■■■□□ 2.64
PTX3-201ENST00000295927 CCER2I3L3R5 266 aa31.56■■■□□ 2.64
PTX3-201ENST00000295927 UBR1Q8IWV7 1749 aa31.55■■■□□ 2.64
PTX3-201ENST00000295927 TRAK1Q9UPV9 953 aa31.52■■■□□ 2.64
PTX3-201ENST00000295927 SENP3Q9H4L4 574 aaPredicted RBP31.51■■■□□ 2.63
PTX3-201ENST00000295927 NLRP1Q9C000 1473 aa31.51■■■□□ 2.63
PTX3-201ENST00000295927 ASXL1Q8IXJ9 1541 aa31.5■■■□□ 2.63
PTX3-201ENST00000295927 ALKQ9UM73 1620 aa31.49■■■□□ 2.63
PTX3-201ENST00000295927 PRKRIP1Q9H875 184 aaPredicted RBP31.48■■■□□ 2.63
PTX3-201ENST00000295927 CENPJQ9HC77 1338 aaPredicted RBP31.47■■■□□ 2.63
PTX3-201ENST00000295927 ARHGEF28Q8N1W1 1705 aaKnown RBP31.47■■■□□ 2.63
PTX3-201ENST00000295927 SLC24A1O60721 1099 aa31.47■■■□□ 2.63
PTX3-201ENST00000295927 PLPPR3Q6T4P5 718 aa31.46■■■□□ 2.63
PTX3-201ENST00000295927 RIMS1Q86UR5 1692 aaKnown RBP31.46■■■□□ 2.63
PTX3-201ENST00000295927 QRICH2Q9H0J4 1663 aa31.46■■■□□ 2.63
PTX3-201ENST00000295927 CDCA8Q53HL2 280 aa31.45■■■□□ 2.63
PTX3-201ENST00000295927 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.45■■■□□ 2.63
PTX3-201ENST00000295927 SBNO2Q9Y2G9 1366 aa31.45■■■□□ 2.63
PTX3-201ENST00000295927 ADAMTSL3P82987 1691 aa31.42■■■□□ 2.62
PTX3-201ENST00000295927 TMEM2Q9UHN6 1383 aa31.41■■■□□ 2.62
PTX3-201ENST00000295927 SETD1AO15047 1707 aaKnown RBP31.4■■■□□ 2.62
PTX3-201ENST00000295927 HDGFP51858 240 aaKnown RBP31.4■■■□□ 2.62
PTX3-201ENST00000295927 NRXN3Q9Y4C0 1643 aa31.39■■■□□ 2.62
PTX3-201ENST00000295927 CENPBP07199 599 aaPredicted RBP31.39■■■□□ 2.62
PTX3-201ENST00000295927 PTPRMP28827 1452 aa31.37■■■□□ 2.61
PTX3-201ENST00000295927 YTHDC2Q9H6S0 1430 aaKnown RBP31.37■■■□□ 2.61
PTX3-201ENST00000295927 MYOM1P52179 1685 aa31.36■■■□□ 2.61
PTX3-201ENST00000295927 STK26Q9P289 416 aa31.36■■■□□ 2.61
PTX3-201ENST00000295927 PANK3Q9H999 370 aa31.34■■■□□ 2.61
PTX3-201ENST00000295927 PER1O15534 1290 aaPredicted RBP31.33■■■□□ 2.61
PTX3-201ENST00000295927 CNGB1Q14028 1251 aaPredicted RBP31.32■■■□□ 2.6
PTX3-201ENST00000295927 SLIT1O75093 1534 aa31.28■■■□□ 2.6
PTX3-201ENST00000295927 ARHGAP23Q9P227 1491 aa31.27■■■□□ 2.6
PTX3-201ENST00000295927 LTKP29376 864 aa31.26■■■□□ 2.59
PTX3-201ENST00000295927 CCDC184Q52MB2 194 aa31.26■■■□□ 2.59
PTX3-201ENST00000295927 LRPPRCP42704 1394 aaKnown RBP31.25■■■□□ 2.59
PTX3-201ENST00000295927 TULP4Q9NRJ4 1543 aa31.24■■■□□ 2.59
PTX3-201ENST00000295927 TXNDC2Q86VQ3 553 aa31.24■■■□□ 2.59
PTX3-201ENST00000295927 THEMISQ8N1K5 641 aaPredicted RBP31.24■■■□□ 2.59
PTX3-201ENST00000295927 CEP170BQ9Y4F5 1589 aaPredicted RBP31.23■■■□□ 2.59
PTX3-201ENST00000295927 DLC1Q96QB1 1528 aa31.23■■■□□ 2.59
PTX3-201ENST00000295927 KTN1Q86UP2 1357 aaKnown RBP31.23■■■□□ 2.59
PTX3-201ENST00000295927 PLEKHG1Q9ULL1 1385 aa31.23■■■□□ 2.59
PTX3-201ENST00000295927 SAFB2Q14151 953 aaKnown RBP eCLIP31.23■■■□□ 2.59
PTX3-201ENST00000295927 PRAM1Q96QH2 718 aa31.23■■■□□ 2.59
PTX3-201ENST00000295927 METP08581 1390 aa31.22■■■□□ 2.59
PTX3-201ENST00000295927 BCANQ96GW7 911 aa31.22■■■□□ 2.59
PTX3-201ENST00000295927 EID1Q9Y6B2 187 aa31.22■■■□□ 2.59
PTX3-201ENST00000295927 EVC2Q86UK5 1308 aa31.21■■■□□ 2.59
PTX3-201ENST00000295927 POGKQ9P215 609 aa31.21■■■□□ 2.59
PTX3-201ENST00000295927 RALBP1Q15311 655 aa31.2■■■□□ 2.59
PTX3-201ENST00000295927 ABCC11Q96J66 1382 aa31.19■■■□□ 2.58
PTX3-201ENST00000295927 ADAMTS13Q76LX8 1427 aa31.19■■■□□ 2.58
PTX3-201ENST00000295927 MRS2Q9HD23 443 aa31.19■■■□□ 2.58
PTX3-201ENST00000295927 KNDC1Q76NI1 1749 aa31.17■■■□□ 2.58
PTX3-201ENST00000295927 PUS7Q96PZ0 661 aaKnown RBP31.16■■■□□ 2.58
PTX3-201ENST00000295927 PARD3Q8TEW0 1356 aa31.16■■■□□ 2.58
PTX3-201ENST00000295927 SETD1BQ9UPS6 1966 aaKnown RBP31.15■■■□□ 2.58
PTX3-201ENST00000295927 ZNF142P52746 1687 aaPredicted RBP31.15■■■□□ 2.58
PTX3-201ENST00000295927 KNSTRNQ9Y448 316 aa31.15■■■□□ 2.58
PTX3-201ENST00000295927 MINK1Q8N4C8 1332 aaPredicted RBP31.13■■■□□ 2.57
PTX3-201ENST00000295927 CC2D1BQ5T0F9 858 aaKnown RBP31.13■■■□□ 2.57
PTX3-201ENST00000295927 MYBBP1AQ9BQG0 1328 aaKnown RBP31.13■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms