RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 DMRT2Q9Y5R5 561 aa13.11□□□□□ -0.31
LMX1A-201ENST00000294816 ZNF521Q96K83 1311 aa13.11□□□□□ -0.31
LMX1A-201ENST00000294816 INSRP06213 1382 aa13.1□□□□□ -0.31
LMX1A-201ENST00000294816 E9PSI1 815 aa13.1□□□□□ -0.31
LMX1A-201ENST00000294816 DISP1Q96F81 1524 aa13.09□□□□□ -0.31
LMX1A-201ENST00000294816 MCM4P33991 863 aa13.09□□□□□ -0.31
LMX1A-201ENST00000294816 NKTRP30414 1462 aaKnown RBP13.09□□□□□ -0.31
LMX1A-201ENST00000294816 ITSN2Q9NZM3 1697 aa13.08□□□□□ -0.32
LMX1A-201ENST00000294816 MFAP1P55081 439 aaKnown RBP13.08□□□□□ -0.32
LMX1A-201ENST00000294816 ANTXR1Q9H6X2 564 aa13.08□□□□□ -0.32
LMX1A-201ENST00000294816 RRP7AQ9Y3A4 280 aaKnown RBP13.08□□□□□ -0.32
LMX1A-201ENST00000294816 MRC2Q9UBG0 1479 aa13.08□□□□□ -0.32
LMX1A-201ENST00000294816 KIAA0556O60303 1618 aa13.08□□□□□ -0.32
LMX1A-201ENST00000294816 CEP170Q5SW79 1584 aa13.08□□□□□ -0.32
LMX1A-201ENST00000294816 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
LMX1A-201ENST00000294816 KDM5DQ9BY66 1539 aa13.07□□□□□ -0.32
LMX1A-201ENST00000294816 SLC24A1O60721 1099 aa13.07□□□□□ -0.32
LMX1A-201ENST00000294816 PDZRN3Q9UPQ7 1066 aa13.07□□□□□ -0.32
LMX1A-201ENST00000294816 ADAMTS12P58397 1594 aa13.07□□□□□ -0.32
LMX1A-201ENST00000294816 TRAK2O60296 914 aa13.07□□□□□ -0.32
LMX1A-201ENST00000294816 PDE3AQ14432 1141 aa13.06□□□□□ -0.32
LMX1A-201ENST00000294816 TBC1D32Q96NH3 1257 aa13.06□□□□□ -0.32
LMX1A-201ENST00000294816 TNNQ9UQP3 1299 aa13.06□□□□□ -0.32
LMX1A-201ENST00000294816 TNNT2P45379 298 aaPredicted RBP13.06□□□□□ -0.32
LMX1A-201ENST00000294816 ZMYND15Q9H091 742 aa13.06□□□□□ -0.32
LMX1A-201ENST00000294816 PBRM1Q86U86 1689 aa13.06□□□□□ -0.32
LMX1A-201ENST00000294816 A2MP01023 1474 aa13.05□□□□□ -0.32
LMX1A-201ENST00000294816 MYH16Q9H6N6 1097 aa13.05□□□□□ -0.32
LMX1A-201ENST00000294816 TRPM1Q7Z4N2 1603 aa13.05□□□□□ -0.32
LMX1A-201ENST00000294816 MAGI2Q86UL8 1455 aa13.05□□□□□ -0.32
LMX1A-201ENST00000294816 PMFBP1Q8TBY8 1022 aa13.05□□□□□ -0.32
LMX1A-201ENST00000294816 CLCN1P35523 988 aa13.04□□□□□ -0.32
LMX1A-201ENST00000294816 TRIM44Q96DX7 344 aaPredicted RBP13.04□□□□□ -0.32
LMX1A-201ENST00000294816 TARBP1Q13395 1621 aaKnown RBP13.04□□□□□ -0.32
LMX1A-201ENST00000294816 CHMP7Q8WUX9 453 aaPredicted RBP13.04□□□□□ -0.32
LMX1A-201ENST00000294816 PCDHB15Q9Y5E8 787 aa13.04□□□□□ -0.32
LMX1A-201ENST00000294816 GPRASP1Q5JY77 1395 aa13.04□□□□□ -0.32
LMX1A-201ENST00000294816 TRMT2AQ8IZ69 625 aaKnown RBP13.04□□□□□ -0.32
LMX1A-201ENST00000294816 CROCC2H7BZ55 1655 aa13.04□□□□□ -0.32
LMX1A-201ENST00000294816 FAM135AQ9P2D6 1515 aa13.04□□□□□ -0.32
LMX1A-201ENST00000294816 CDCA8Q53HL2 280 aa13.03□□□□□ -0.32
LMX1A-201ENST00000294816 CHMP5Q9NZZ3 219 aa13.03□□□□□ -0.32
LMX1A-201ENST00000294816 MRE11P49959 708 aa13.02□□□□□ -0.33
LMX1A-201ENST00000294816 C22orf23Q9BZE7 217 aa13.02□□□□□ -0.33
LMX1A-201ENST00000294816 FSD2A1L4K1 749 aa13.01□□□□□ -0.33
LMX1A-201ENST00000294816 RLBP1P12271 317 aa13.01□□□□□ -0.33
LMX1A-201ENST00000294816 HSCBQ8IWL3 235 aa13.01□□□□□ -0.33
LMX1A-201ENST00000294816 RWDD1Q9H446 243 aaPredicted RBP13.01□□□□□ -0.33
LMX1A-201ENST00000294816 GRPEL1Q9HAV7 217 aa13.01□□□□□ -0.33
LMX1A-201ENST00000294816 ESPNB1AK53 854 aa13□□□□□ -0.33
LMX1A-201ENST00000294816 WWC1Q8IX03 1113 aa13□□□□□ -0.33
LMX1A-201ENST00000294816 PTPRGP23470 1445 aa13□□□□□ -0.33
LMX1A-201ENST00000294816 RRP9O43818 475 aaKnown RBP13□□□□□ -0.33
LMX1A-201ENST00000294816 EIF4G3O43432 1585 aaKnown RBP12.99□□□□□ -0.33
LMX1A-201ENST00000294816 PRDM15P57071 1507 aaPredicted RBP12.99□□□□□ -0.33
LMX1A-201ENST00000294816 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
LMX1A-201ENST00000294816 WDR7Q9Y4E6 1490 aa12.99□□□□□ -0.33
LMX1A-201ENST00000294816 FTSJ3Q8IY81 847 aaKnown RBP12.98□□□□□ -0.33
LMX1A-201ENST00000294816 SHANK2Q9UPX8 1470 aa12.98□□□□□ -0.33
LMX1A-201ENST00000294816 NLRP1Q9C000 1473 aa12.98□□□□□ -0.33
LMX1A-201ENST00000294816 PLA2R1Q13018 1463 aa12.98□□□□□ -0.33
LMX1A-201ENST00000294816 RARSP54136 660 aaKnown RBP12.98□□□□□ -0.33
LMX1A-201ENST00000294816 JPH4Q96JJ6 628 aa12.97□□□□□ -0.33
LMX1A-201ENST00000294816 DDX11L8A8MPP1 907 aa12.97□□□□□ -0.33
LMX1A-201ENST00000294816 ASXL1Q8IXJ9 1541 aa12.96□□□□□ -0.33
LMX1A-201ENST00000294816 CDC42BPAQ5VT25 1732 aa12.96□□□□□ -0.33
LMX1A-201ENST00000294816 PIK3C2GO75747 1445 aa12.96□□□□□ -0.33
LMX1A-201ENST00000294816 MAGI1Q96QZ7 1491 aaPredicted RBP12.96□□□□□ -0.34
LMX1A-201ENST00000294816 ERBB4Q15303 1308 aa12.96□□□□□ -0.34
LMX1A-201ENST00000294816 HSP90AB1P08238 724 aaKnown RBP12.95□□□□□ -0.34
LMX1A-201ENST00000294816 CARMIL2Q6F5E8 1435 aa12.95□□□□□ -0.34
LMX1A-201ENST00000294816 NINLQ9Y2I6 1382 aa12.95□□□□□ -0.34
LMX1A-201ENST00000294816 ADRA2BP18089 450 aa12.94□□□□□ -0.34
LMX1A-201ENST00000294816 TCP11L2Q8N4U5 519 aa12.94□□□□□ -0.34
LMX1A-201ENST00000294816 GRIN2AQ12879 1464 aa12.93□□□□□ -0.34
LMX1A-201ENST00000294816 CCDC141Q6ZP82 1450 aa12.93□□□□□ -0.34
LMX1A-201ENST00000294816 MORC1Q86VD1 984 aa12.93□□□□□ -0.34
LMX1A-201ENST00000294816 ADCY10Q96PN6 1610 aa12.93□□□□□ -0.34
LMX1A-201ENST00000294816 ITPRIPQ8IWB1 547 aa12.92□□□□□ -0.34
LMX1A-201ENST00000294816 VIRMAQ69YN4 1812 aaKnown RBP12.92□□□□□ -0.34
LMX1A-201ENST00000294816 GAS2L3Q86XJ1 694 aa12.91□□□□□ -0.34
LMX1A-201ENST00000294816 DNAJC5Q9H3Z4 198 aa12.91□□□□□ -0.34
LMX1A-201ENST00000294816 ABCC10Q5T3U5 1492 aa12.91□□□□□ -0.34
LMX1A-201ENST00000294816 CLASP1Q7Z460 1538 aa12.91□□□□□ -0.34
LMX1A-201ENST00000294816 EIF2AK4Q9P2K8 1649 aaKnown RBP12.91□□□□□ -0.34
LMX1A-201ENST00000294816 TNPO1Q92973 898 aaKnown RBP12.91□□□□□ -0.34
LMX1A-201ENST00000294816 GBP4Q96PP9 640 aa12.91□□□□□ -0.34
LMX1A-201ENST00000294816 ATP10BO94823 1461 aa12.91□□□□□ -0.34
LMX1A-201ENST00000294816 NGEFQ8N5V2 710 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 RUNDC1Q96C34 613 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 CARD14Q9BXL6 1004 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 NUP160Q12769 1436 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 MVPQ14764 893 aaKnown RBP12.9□□□□□ -0.34
LMX1A-201ENST00000294816 ZKSCAN2Q63HK3 967 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 DZIP1LQ8IYY4 767 aaKnown RBP12.9□□□□□ -0.34
LMX1A-201ENST00000294816 ANP32BQ92688 251 aaKnown RBP12.9□□□□□ -0.34
LMX1A-201ENST00000294816 ABCC2Q92887 1545 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 RSPH4AQ5TD94 716 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 SMC4Q9NTJ3 1288 aa12.9□□□□□ -0.34
LMX1A-201ENST00000294816 KIAA1211Q6ZU35 1233 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms