RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 NAT10Q9H0A0 1025 aaKnown RBP9.71□□□□□ -0.85
LIMD1-201ENST00000273317 AMPHP49418 695 aa9.71□□□□□ -0.85
LIMD1-201ENST00000273317 CWC15Q9P013 229 aaKnown RBP9.71□□□□□ -0.85
LIMD1-201ENST00000273317 TCEAL9Q9UHQ7 104 aa9.71□□□□□ -0.85
LIMD1-201ENST00000273317 CCDC39Q9UFE4 941 aa9.71□□□□□ -0.85
LIMD1-201ENST00000273317 WWC1Q8IX03 1113 aa9.71□□□□□ -0.86
LIMD1-201ENST00000273317 G3V3G9 751 aa9.71□□□□□ -0.86
LIMD1-201ENST00000273317 DCAF8Q5TAQ9 597 aa9.71□□□□□ -0.86
LIMD1-201ENST00000273317 NOL10Q9BSC4 688 aaKnown RBP9.71□□□□□ -0.86
LIMD1-201ENST00000273317 GGT6Q6P531 493 aa9.71□□□□□ -0.86
LIMD1-201ENST00000273317 CCP110O43303 1012 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 L3MBTL2Q969R5 705 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 SCAPERQ9BY12 1400 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 NINLQ9Y2I6 1382 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 KIF7Q2M1P5 1343 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 MCTP1Q6DN14 999 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 RUFY1Q96T51 708 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 NEXNQ0ZGT2 675 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 DHX8Q14562 1220 aaKnown RBP9.7□□□□□ -0.86
LIMD1-201ENST00000273317 CHMP5Q9NZZ3 219 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 ANKRD45Q5TZF3 282 aa9.7□□□□□ -0.86
LIMD1-201ENST00000273317 MIA2Q96PC5 1412 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 MLECQ14165 292 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 RRP12Q5JTH9 1297 aaKnown RBP9.69□□□□□ -0.86
LIMD1-201ENST00000273317 KIF21BO75037 1637 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 CLUAP1Q96AJ1 413 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 API5Q9BZZ5 524 aaKnown RBP9.69□□□□□ -0.86
LIMD1-201ENST00000273317 LETM1O95202 739 aaPredicted RBP9.69□□□□□ -0.86
LIMD1-201ENST00000273317 RILPL2Q969X0 211 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 COG3Q96JB2 828 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 DHX57Q6P158 1386 aaKnown RBP9.69□□□□□ -0.86
LIMD1-201ENST00000273317 C1orf141Q5JVX7 400 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 NGDNQ8NEJ9 315 aaKnown RBP9.69□□□□□ -0.86
LIMD1-201ENST00000273317 ANO2Q9NQ90 1003 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 MYO6Q9UM54 1294 aa9.69□□□□□ -0.86
LIMD1-201ENST00000273317 RDXP35241 583 aaKnown RBP9.68□□□□□ -0.86
LIMD1-201ENST00000273317 DCTN1Q14203 1278 aa9.68□□□□□ -0.86
LIMD1-201ENST00000273317 CPLX1O14810 134 aa9.68□□□□□ -0.86
LIMD1-201ENST00000273317 INTS3Q68E01 1043 aaKnown RBP9.68□□□□□ -0.86
LIMD1-201ENST00000273317 CNTLNQ9NXG0 1405 aa9.68□□□□□ -0.86
LIMD1-201ENST00000273317 HOMER1Q86YM7 354 aa9.68□□□□□ -0.86
LIMD1-201ENST00000273317 FRAT2O75474 233 aaPredicted RBP9.67□□□□□ -0.86
LIMD1-201ENST00000273317 HSP90B2PQ58FF3 399 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 FAM43AQ8N2R8 423 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 HSP90AB4PQ58FF6 505 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 CCDC73Q6ZRK6 1079 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 ERC2O15083 957 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 ZNF592Q92610 1267 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 WASHC2CQ9Y4E1 1318 aa9.67□□□□□ -0.86
LIMD1-201ENST00000273317 ERCC4Q92889 916 aaPredicted RBP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 PCMTD1Q96MG8 357 aaPredicted RBP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 PANK3Q9H999 370 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 TRIM34Q9BYJ4 488 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 MYOM3Q5VTT5 1437 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 BICD2Q8TD16 824 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 IFIT2P09913 472 aaKnown RBP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 SASS6Q6UVJ0 657 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 MNS1Q8NEH6 495 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 SAFBQ15424 915 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 DZIP1LQ8IYY4 767 aaKnown RBP9.66□□□□□ -0.86
LIMD1-201ENST00000273317 CRBNQ96SW2 442 aa9.66□□□□□ -0.86
LIMD1-201ENST00000273317 TRDNQ13061 729 aa9.65□□□□□ -0.86
LIMD1-201ENST00000273317 SUPT6HQ7KZ85 1726 aaKnown RBP9.65□□□□□ -0.86
LIMD1-201ENST00000273317 C9orf78Q9NZ63 289 aaPredicted RBP9.65□□□□□ -0.86
LIMD1-201ENST00000273317 DDX58O95786 925 aaKnown RBP9.65□□□□□ -0.86
LIMD1-201ENST00000273317 GTF2E1P29083 439 aaPredicted RBP9.65□□□□□ -0.86
LIMD1-201ENST00000273317 PRKRIP1Q9H875 184 aaPredicted RBP9.65□□□□□ -0.87
LIMD1-201ENST00000273317 FYCO1Q9BQS8 1478 aa9.65□□□□□ -0.87
LIMD1-201ENST00000273317 STAC3Q96MF2 364 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 OLFM4Q6UX06 510 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 TTC5Q8N0Z6 440 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 BRMS1Q9HCU9 246 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 BRD4O60885 1362 aaPredicted RBP9.64□□□□□ -0.87
LIMD1-201ENST00000273317 CCDC66A2RUB6 948 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 KIF3BO15066 747 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 NASPP49321 788 aaPredicted RBP9.64□□□□□ -0.87
LIMD1-201ENST00000273317 MRE11P49959 708 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 SMC3Q9UQE7 1217 aa9.64□□□□□ -0.87
LIMD1-201ENST00000273317 RRBP1Q9P2E9 1410 aaKnown RBP9.64□□□□□ -0.87
LIMD1-201ENST00000273317 IFT57Q9NWB7 429 aa9.63□□□□□ -0.87
LIMD1-201ENST00000273317 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.63□□□□□ -0.87
LIMD1-201ENST00000273317 MBD3O95983 291 aa9.63□□□□□ -0.87
LIMD1-201ENST00000273317 VGFO15240 615 aaPredicted RBP9.63□□□□□ -0.87
LIMD1-201ENST00000273317 HMGN5P82970 282 aaKnown RBP9.63□□□□□ -0.87
LIMD1-201ENST00000273317 CCDC173Q0VFZ6 552 aa9.63□□□□□ -0.87
LIMD1-201ENST00000273317 MEX3CQ5U5Q3 659 aaKnown RBP9.63□□□□□ -0.87
LIMD1-201ENST00000273317 CDC45O75419 566 aa9.63□□□□□ -0.87
LIMD1-201ENST00000273317 CCDC191Q8NCU4 936 aa9.63□□□□□ -0.87
LIMD1-201ENST00000273317 ERICH2A1L162 156 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 PSMA5P28066 241 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 G3BP1Q13283 466 aaKnown RBP eCLIP9.62□□□□□ -0.87
LIMD1-201ENST00000273317 EXOC6Q8TAG9 804 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 FAM13BQ9NYF5 915 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 PODXL2Q9NZ53 605 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 RRP7AQ9Y3A4 280 aaKnown RBP9.62□□□□□ -0.87
LIMD1-201ENST00000273317 RUNDC1Q96C34 613 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 ST20-MTHFSA0A0A6YYL1 179 aa9.62□□□□□ -0.87
LIMD1-201ENST00000273317 C22orf23Q9BZE7 217 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms