RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 UNC13BO14795 1591 aa21.29■■□□□ 1
CTCF-201ENST00000264010 POGKQ9P215 609 aa21.29■■□□□ 1
CTCF-201ENST00000264010 ATP7AQ04656 1500 aa21.28■■□□□ 1
CTCF-201ENST00000264010 PPP2R1AP30153 589 aa21.28■■□□□ 1
CTCF-201ENST00000264010 NUTM2DQ5VT03 806 aaPredicted RBP21.27■■□□□ 1
CTCF-201ENST00000264010 PARD3Q8TEW0 1356 aa21.27■□□□□ 0.99
CTCF-201ENST00000264010 COL17A1Q9UMD9 1497 aaPredicted RBP21.26■□□□□ 0.99
CTCF-201ENST00000264010 IQGAP3Q86VI3 1631 aa21.26■□□□□ 0.99
CTCF-201ENST00000264010 RAPGEF3O95398 923 aa21.26■□□□□ 0.99
CTCF-201ENST00000264010 GOLGA2Q08379 1002 aa21.26■□□□□ 0.99
CTCF-201ENST00000264010 ZNF518AQ6AHZ1 1483 aa21.26■□□□□ 0.99
CTCF-201ENST00000264010 NEFMP07197 916 aa21.25■□□□□ 0.99
CTCF-201ENST00000264010 STK26Q9P289 416 aa21.25■□□□□ 0.99
CTCF-201ENST00000264010 SAFB2Q14151 953 aaKnown RBP eCLIP21.25■□□□□ 0.99
CTCF-201ENST00000264010 ADAMTS8Q9UP79 889 aa21.25■□□□□ 0.99
CTCF-201ENST00000264010 ATP10AO60312 1499 aa21.24■□□□□ 0.99
CTCF-201ENST00000264010 PER1O15534 1290 aaPredicted RBP21.24■□□□□ 0.99
CTCF-201ENST00000264010 BCORL1Q5H9F3 1711 aa21.24■□□□□ 0.99
CTCF-201ENST00000264010 ARAP3Q8WWN8 1544 aa21.24■□□□□ 0.99
CTCF-201ENST00000264010 ADGRF5Q8IZF2 1346 aa21.24■□□□□ 0.99
CTCF-201ENST00000264010 SRPK2P78362 688 aaKnown RBP21.23■□□□□ 0.99
CTCF-201ENST00000264010 RPGRIP1LQ68CZ1 1315 aa21.22■□□□□ 0.99
CTCF-201ENST00000264010 CCDC146Q8IYE0 955 aa21.22■□□□□ 0.99
CTCF-201ENST00000264010 EVC2Q86UK5 1308 aa21.2■□□□□ 0.98
CTCF-201ENST00000264010 NEUROD2Q15784 382 aa21.2■□□□□ 0.98
CTCF-201ENST00000264010 TMEM132EQ6IEE7 984 aa21.2■□□□□ 0.98
CTCF-201ENST00000264010 EXOC6Q8TAG9 804 aa21.2■□□□□ 0.98
CTCF-201ENST00000264010 CDCA7LQ96GN5 454 aa21.2■□□□□ 0.98
CTCF-201ENST00000264010 NOP58Q9Y2X3 529 aaKnown RBP21.19■□□□□ 0.98
CTCF-201ENST00000264010 LRPPRCP42704 1394 aaKnown RBP21.18■□□□□ 0.98
CTCF-201ENST00000264010 FAM69CQ0P6D2 419 aa21.17■□□□□ 0.98
CTCF-201ENST00000264010 ZFYVE16Q7Z3T8 1539 aa21.17■□□□□ 0.98
CTCF-201ENST00000264010 MLECQ14165 292 aa21.17■□□□□ 0.98
CTCF-201ENST00000264010 POLR1AO95602 1720 aaPredicted RBP21.15■□□□□ 0.98
CTCF-201ENST00000264010 CGNL1Q0VF96 1302 aa21.15■□□□□ 0.98
CTCF-201ENST00000264010 APAF1O14727 1248 aa21.14■□□□□ 0.97
CTCF-201ENST00000264010 TRPM2O94759 1503 aa21.14■□□□□ 0.97
CTCF-201ENST00000264010 NGEFQ8N5V2 710 aa21.14■□□□□ 0.97
CTCF-201ENST00000264010 PTPRTO14522 1441 aa21.14■□□□□ 0.97
CTCF-201ENST00000264010 NOS1P29475 1434 aa21.14■□□□□ 0.97
CTCF-201ENST00000264010 TRPM1Q7Z4N2 1603 aa21.13■□□□□ 0.97
CTCF-201ENST00000264010 SLC52A1Q9NWF4 448 aa21.13■□□□□ 0.97
CTCF-201ENST00000264010 PLIN1O60240 522 aa21.13■□□□□ 0.97
CTCF-201ENST00000264010 FANCIQ9NVI1 1328 aa21.13■□□□□ 0.97
CTCF-201ENST00000264010 MAGI2Q86UL8 1455 aa21.12■□□□□ 0.97
CTCF-201ENST00000264010 TCERG1O14776 1098 aaKnown RBP21.12■□□□□ 0.97
CTCF-201ENST00000264010 PRDM15P57071 1507 aaPredicted RBP21.12■□□□□ 0.97
CTCF-201ENST00000264010 AMER1Q5JTC6 1135 aaPredicted RBP21.11■□□□□ 0.97
CTCF-201ENST00000264010 TERF2IPQ9NYB0 399 aa21.1■□□□□ 0.97
CTCF-201ENST00000264010 HDGFL2Q7Z4V5 671 aaPredicted RBP21.1■□□□□ 0.97
CTCF-201ENST00000264010 C14orf93Q9H972 538 aaKnown RBP21.09■□□□□ 0.97
CTCF-201ENST00000264010 U2SURPO15042 1029 aaKnown RBP21.09■□□□□ 0.97
CTCF-201ENST00000264010 SLC12A5Q9H2X9 1139 aa21.09■□□□□ 0.97
CTCF-201ENST00000264010 E9PSI1 815 aa21.08■□□□□ 0.97
CTCF-201ENST00000264010 CRBNQ96SW2 442 aa21.08■□□□□ 0.96
CTCF-201ENST00000264010 MAPK8IP3Q9UPT6 1336 aa21.08■□□□□ 0.96
CTCF-201ENST00000264010 U2AF1L5P0DN76 240 aaPredicted RBP21.08■□□□□ 0.96
CTCF-201ENST00000264010 U2AF1Q01081 240 aaKnown RBP eCLIP21.08■□□□□ 0.96
CTCF-201ENST00000264010 VSIG10Q8N0Z9 540 aa21.07■□□□□ 0.96
CTCF-201ENST00000264010 HDGFP51858 240 aaKnown RBP21.07■□□□□ 0.96
CTCF-201ENST00000264010 POGZQ7Z3K3 1410 aa21.06■□□□□ 0.96
CTCF-201ENST00000264010 NAP1L5Q96NT1 182 aaPredicted RBP21.06■□□□□ 0.96
CTCF-201ENST00000264010 ASXL1Q8IXJ9 1541 aa21.05■□□□□ 0.96
CTCF-201ENST00000264010 TET3O43151 1660 aa21.05■□□□□ 0.96
CTCF-201ENST00000264010 ABCA9Q8IUA7 1624 aa21.04■□□□□ 0.96
CTCF-201ENST00000264010 FRAT1Q92837 279 aaPredicted RBP21.03■□□□□ 0.96
CTCF-201ENST00000264010 MINK1Q8N4C8 1332 aaPredicted RBP21.03■□□□□ 0.96
CTCF-201ENST00000264010 IL27Q8NEV9 243 aa21.03■□□□□ 0.96
CTCF-201ENST00000264010 PNNQ9H307 717 aaKnown RBP21.02■□□□□ 0.96
CTCF-201ENST00000264010 CABP2Q9NPB3 220 aa21.02■□□□□ 0.96
CTCF-201ENST00000264010 PPM1GO15355 546 aaPredicted RBP21.02■□□□□ 0.96
CTCF-201ENST00000264010 IDI1Q13907 227 aa21.02■□□□□ 0.96
CTCF-201ENST00000264010 RNF123Q5XPI4 1314 aa21.01■□□□□ 0.95
CTCF-201ENST00000264010 INSRP06213 1382 aa21.01■□□□□ 0.95
CTCF-201ENST00000264010 NSD3Q9BZ95 1437 aa21■□□□□ 0.95
CTCF-201ENST00000264010 CFAP74Q9C0B2 1584 aa21■□□□□ 0.95
CTCF-201ENST00000264010 LAMC1P11047 1609 aa21■□□□□ 0.95
CTCF-201ENST00000264010 RUNDC1Q96C34 613 aa20.99■□□□□ 0.95
CTCF-201ENST00000264010 NPC1L1Q9UHC9 1359 aa20.99■□□□□ 0.95
CTCF-201ENST00000264010 E9PCH4 1651 aa20.99■□□□□ 0.95
CTCF-201ENST00000264010 RRP7AQ9Y3A4 280 aaKnown RBP20.98■□□□□ 0.95
CTCF-201ENST00000264010 MTHFSP49914 203 aa20.98■□□□□ 0.95
CTCF-201ENST00000264010 MYH16Q9H6N6 1097 aa20.98■□□□□ 0.95
CTCF-201ENST00000264010 CLTCL1P53675 1640 aa20.98■□□□□ 0.95
CTCF-201ENST00000264010 NEO1Q92859 1461 aa20.98■□□□□ 0.95
CTCF-201ENST00000264010 MLH3Q9UHC1 1453 aa20.98■□□□□ 0.95
CTCF-201ENST00000264010 PLPPR3Q6T4P5 718 aa20.97■□□□□ 0.95
CTCF-201ENST00000264010 SPHKAPQ2M3C7 1700 aa20.97■□□□□ 0.95
CTCF-201ENST00000264010 PIK3C2GO75747 1445 aa20.96■□□□□ 0.95
CTCF-201ENST00000264010 MYOM2P54296 1465 aa20.96■□□□□ 0.95
CTCF-201ENST00000264010 NPATQ14207 1427 aa20.96■□□□□ 0.95
CTCF-201ENST00000264010 INO80Q9ULG1 1556 aaPredicted RBP20.95■□□□□ 0.94
CTCF-201ENST00000264010 UGGT1Q9NYU2 1555 aa20.94■□□□□ 0.94
CTCF-201ENST00000264010 MS4A1P11836 297 aa20.94■□□□□ 0.94
CTCF-201ENST00000264010 RGS3P49796 1198 aa20.94■□□□□ 0.94
CTCF-201ENST00000264010 DDRGK1Q96HY6 314 aa20.94■□□□□ 0.94
CTCF-201ENST00000264010 PKNOX2Q96KN3 472 aa20.94■□□□□ 0.94
CTCF-201ENST00000264010 SLFN5Q08AF3 891 aa20.94■□□□□ 0.94
CTCF-201ENST00000264010 CENPQQ7L2Z9 268 aaPredicted RBP20.94■□□□□ 0.94
CTCF-201ENST00000264010 PRAM1Q96QH2 718 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms