RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 MROH2AA6NES4 1674 aa13.51□□□□□ -0.25
COPB1-201ENST00000249923 SCAPERQ9BY12 1400 aa13.51□□□□□ -0.25
COPB1-201ENST00000249923 PLEKHH1Q9ULM0 1364 aa13.51□□□□□ -0.25
COPB1-201ENST00000249923 ADAMTS8Q9UP79 889 aa13.51□□□□□ -0.25
COPB1-201ENST00000249923 FANCAO15360 1455 aa13.5□□□□□ -0.25
COPB1-201ENST00000249923 SCAF11Q99590 1463 aaKnown RBP13.5□□□□□ -0.25
COPB1-201ENST00000249923 ABCA6Q8N139 1617 aa13.5□□□□□ -0.25
COPB1-201ENST00000249923 INSRP06213 1382 aa13.5□□□□□ -0.25
COPB1-201ENST00000249923 IFT172Q9UG01 1749 aa13.5□□□□□ -0.25
COPB1-201ENST00000249923 SKAP1Q86WV1 359 aa13.49□□□□□ -0.25
COPB1-201ENST00000249923 KIDINS220Q9ULH0 1771 aa13.48□□□□□ -0.25
COPB1-201ENST00000249923 EIF5BO60841 1220 aaKnown RBP13.48□□□□□ -0.25
COPB1-201ENST00000249923 PPP2R1AP30153 589 aa13.48□□□□□ -0.25
COPB1-201ENST00000249923 PPRC1Q5VV67 1664 aaKnown RBP13.48□□□□□ -0.25
COPB1-201ENST00000249923 KIAA1210Q9ULL0 1709 aa13.48□□□□□ -0.25
COPB1-201ENST00000249923 PDE3BQ13370 1112 aa13.48□□□□□ -0.25
COPB1-201ENST00000249923 MAP3K4Q9Y6R4 1608 aa13.47□□□□□ -0.25
COPB1-201ENST00000249923 C20orf194Q5TEA3 1177 aa13.47□□□□□ -0.25
COPB1-201ENST00000249923 LAS1LQ9Y4W2 734 aaKnown RBP13.47□□□□□ -0.25
COPB1-201ENST00000249923 ZNF521Q96K83 1311 aa13.46□□□□□ -0.25
COPB1-201ENST00000249923 ERVK-7P63135 1459 aa13.46□□□□□ -0.25
COPB1-201ENST00000249923 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.46□□□□□ -0.26
COPB1-201ENST00000249923 NEURL4Q96JN8 1562 aa13.46□□□□□ -0.26
COPB1-201ENST00000249923 ANP32AP39687 249 aaKnown RBP13.45□□□□□ -0.26
COPB1-201ENST00000249923 EFCAB6Q5THR3 1501 aa13.45□□□□□ -0.26
COPB1-201ENST00000249923 ASXL1Q8IXJ9 1541 aa13.45□□□□□ -0.26
COPB1-201ENST00000249923 ADGRL1O94910 1474 aa13.45□□□□□ -0.26
COPB1-201ENST00000249923 ADGRF5Q8IZF2 1346 aa13.45□□□□□ -0.26
COPB1-201ENST00000249923 KDM5AP29375 1690 aaKnown RBP13.44□□□□□ -0.26
COPB1-201ENST00000249923 KIF3BO15066 747 aa13.44□□□□□ -0.26
COPB1-201ENST00000249923 CFAP70Q5T0N1 1121 aa13.44□□□□□ -0.26
COPB1-201ENST00000249923 MYOM2P54296 1465 aa13.43□□□□□ -0.26
COPB1-201ENST00000249923 NRXN1Q9ULB1 1477 aa13.43□□□□□ -0.26
COPB1-201ENST00000249923 NOP58Q9Y2X3 529 aaKnown RBP13.43□□□□□ -0.26
COPB1-201ENST00000249923 DUSP27Q5VZP5 1158 aa13.42□□□□□ -0.26
COPB1-201ENST00000249923 CRBNQ96SW2 442 aa13.42□□□□□ -0.26
COPB1-201ENST00000249923 ZBTB47Q9UFB7 747 aaPredicted RBP13.42□□□□□ -0.26
COPB1-201ENST00000249923 FRMPD1Q5SYB0 1578 aa13.42□□□□□ -0.26
COPB1-201ENST00000249923 CARD14Q9BXL6 1004 aa13.42□□□□□ -0.26
COPB1-201ENST00000249923 SPINK5Q9NQ38 1064 aaPredicted RBP13.42□□□□□ -0.26
COPB1-201ENST00000249923 ASXL2Q76L83 1435 aa13.42□□□□□ -0.26
COPB1-201ENST00000249923 KIF1BO60333 1816 aa13.41□□□□□ -0.26
COPB1-201ENST00000249923 PIK3C2GO75747 1445 aa13.41□□□□□ -0.26
COPB1-201ENST00000249923 KNSTRNQ9Y448 316 aa13.41□□□□□ -0.26
COPB1-201ENST00000249923 MYO3AQ8NEV4 1616 aa13.41□□□□□ -0.26
COPB1-201ENST00000249923 ANO8Q9HCE9 1232 aaPredicted RBP13.4□□□□□ -0.26
COPB1-201ENST00000249923 ADGRB3O60242 1522 aa13.39□□□□□ -0.27
COPB1-201ENST00000249923 IPO9Q96P70 1041 aaKnown RBP13.39□□□□□ -0.27
COPB1-201ENST00000249923 DMRT2Q9Y5R5 561 aa13.39□□□□□ -0.27
COPB1-201ENST00000249923 ZC3H13Q5T200 1668 aaKnown RBP13.38□□□□□ -0.27
COPB1-201ENST00000249923 NPC1L1Q9UHC9 1359 aa13.38□□□□□ -0.27
COPB1-201ENST00000249923 LMTK2Q8IWU2 1503 aa13.38□□□□□ -0.27
COPB1-201ENST00000249923 CFAP65Q6ZU64 1925 aaKnown RBP13.38□□□□□ -0.27
COPB1-201ENST00000249923 CCDC146Q8IYE0 955 aa13.37□□□□□ -0.27
COPB1-201ENST00000249923 DAXXQ9UER7 740 aaPredicted RBP13.37□□□□□ -0.27
COPB1-201ENST00000249923 KDM2BQ8NHM5 1336 aa13.37□□□□□ -0.27
COPB1-201ENST00000249923 ARXQ96QS3 562 aa13.37□□□□□ -0.27
COPB1-201ENST00000249923 KANK1Q14678 1352 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 ADGRB1O14514 1584 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 PPLO60437 1756 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 SIGLEC1Q9BZZ2 1709 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 SHPRHQ149N8 1683 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 PDE4AP27815 886 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 BACH2Q9BYV9 841 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 NOS1P29475 1434 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 NPATQ14207 1427 aa13.36□□□□□ -0.27
COPB1-201ENST00000249923 TRMT2AQ8IZ69 625 aaKnown RBP13.36□□□□□ -0.27
COPB1-201ENST00000249923 STAC3Q96MF2 364 aa13.35□□□□□ -0.27
COPB1-201ENST00000249923 EIF3AQ14152 1382 aaKnown RBP13.35□□□□□ -0.27
COPB1-201ENST00000249923 TCERG1O14776 1098 aaKnown RBP13.34□□□□□ -0.27
COPB1-201ENST00000249923 SLFN5Q08AF3 891 aa13.33□□□□□ -0.27
COPB1-201ENST00000249923 ZNF518AQ6AHZ1 1483 aa13.33□□□□□ -0.28
COPB1-201ENST00000249923 WDR43Q15061 677 aaKnown RBP eCLIP13.33□□□□□ -0.28
COPB1-201ENST00000249923 QRICH2Q9H0J4 1663 aa13.33□□□□□ -0.28
COPB1-201ENST00000249923 SETBP1Q9Y6X0 1596 aa13.33□□□□□ -0.28
COPB1-201ENST00000249923 CDCA8Q53HL2 280 aa13.32□□□□□ -0.28
COPB1-201ENST00000249923 APAF1O14727 1248 aa13.32□□□□□ -0.28
COPB1-201ENST00000249923 HECW2Q9P2P5 1572 aa13.31□□□□□ -0.28
COPB1-201ENST00000249923 POGZQ7Z3K3 1410 aa13.31□□□□□ -0.28
COPB1-201ENST00000249923 SBNO2Q9Y2G9 1366 aa13.31□□□□□ -0.28
COPB1-201ENST00000249923 GOLGA2Q08379 1002 aa13.31□□□□□ -0.28
COPB1-201ENST00000249923 MYT1LQ9UL68 1186 aa13.31□□□□□ -0.28
COPB1-201ENST00000249923 NEFMP07197 916 aa13.29□□□□□ -0.28
COPB1-201ENST00000249923 MS4A1P11836 297 aa13.29□□□□□ -0.28
COPB1-201ENST00000249923 IL27Q8NEV9 243 aa13.29□□□□□ -0.28
COPB1-201ENST00000249923 ABCC3O15438 1527 aa13.29□□□□□ -0.28
COPB1-201ENST00000249923 BCAR3O75815 825 aa13.29□□□□□ -0.28
COPB1-201ENST00000249923 TMEM132EQ6IEE7 984 aa13.28□□□□□ -0.28
COPB1-201ENST00000249923 PIK3C2BO00750 1634 aa13.27□□□□□ -0.28
COPB1-201ENST00000249923 NKTRP30414 1462 aaKnown RBP13.27□□□□□ -0.28
COPB1-201ENST00000249923 MLH3Q9UHC1 1453 aa13.27□□□□□ -0.28
COPB1-201ENST00000249923 NSD3Q9BZ95 1437 aa13.27□□□□□ -0.28
COPB1-201ENST00000249923 TRAK1Q9UPV9 953 aa13.27□□□□□ -0.28
COPB1-201ENST00000249923 SLC12A5Q9H2X9 1139 aa13.27□□□□□ -0.29
COPB1-201ENST00000249923 CAMSAP1Q5T5Y3 1602 aa13.27□□□□□ -0.29
COPB1-201ENST00000249923 ARHGEF28Q8N1W1 1705 aaKnown RBP13.26□□□□□ -0.29
COPB1-201ENST00000249923 IQSEC2Q5JU85 1478 aa13.26□□□□□ -0.29
COPB1-201ENST00000249923 TULP4Q9NRJ4 1543 aa13.26□□□□□ -0.29
COPB1-201ENST00000249923 CENPJQ9HC77 1338 aaPredicted RBP13.26□□□□□ -0.29
COPB1-201ENST00000249923 GLI2P10070 1586 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms