RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SYNMO15061 1565 aa24.72■■□□□ 1.55
CPSF3-201ENST00000238112 CLTCL1P53675 1640 aa24.71■■□□□ 1.55
CPSF3-201ENST00000238112 AMER1Q5JTC6 1135 aaPredicted RBP24.71■■□□□ 1.55
CPSF3-201ENST00000238112 EIF3AQ14152 1382 aaKnown RBP24.71■■□□□ 1.55
CPSF3-201ENST00000238112 DEPDC5O75140 1603 aa24.7■■□□□ 1.54
CPSF3-201ENST00000238112 TET3O43151 1660 aa24.69■■□□□ 1.54
CPSF3-201ENST00000238112 MS4A1P11836 297 aa24.68■■□□□ 1.54
CPSF3-201ENST00000238112 CRBNQ96SW2 442 aa24.68■■□□□ 1.54
CPSF3-201ENST00000238112 ASXL1Q8IXJ9 1541 aa24.67■■□□□ 1.54
CPSF3-201ENST00000238112 NBR1Q14596 966 aa24.66■■□□□ 1.54
CPSF3-201ENST00000238112 PDE4AP27815 886 aa24.66■■□□□ 1.54
CPSF3-201ENST00000238112 ATP7AQ04656 1500 aa24.65■■□□□ 1.54
CPSF3-201ENST00000238112 FANCAO15360 1455 aa24.63■■□□□ 1.53
CPSF3-201ENST00000238112 KIF3BO15066 747 aa24.63■■□□□ 1.53
CPSF3-201ENST00000238112 NPM2Q86SE8 214 aaKnown RBP24.63■■□□□ 1.53
CPSF3-201ENST00000238112 PLEKHH1Q9ULM0 1364 aa24.63■■□□□ 1.53
CPSF3-201ENST00000238112 PIK3C2GO75747 1445 aa24.63■■□□□ 1.53
CPSF3-201ENST00000238112 INO80Q9ULG1 1556 aaPredicted RBP24.62■■□□□ 1.53
CPSF3-201ENST00000238112 BACH2Q9BYV9 841 aa24.62■■□□□ 1.53
CPSF3-201ENST00000238112 NPC1L1Q9UHC9 1359 aa24.62■■□□□ 1.53
CPSF3-201ENST00000238112 VWDEQ8N2E2 1590 aa24.62■■□□□ 1.53
CPSF3-201ENST00000238112 SLC24A1O60721 1099 aa24.6■■□□□ 1.53
CPSF3-201ENST00000238112 KIAA1210Q9ULL0 1709 aa24.6■■□□□ 1.53
CPSF3-201ENST00000238112 GOLGA2Q08379 1002 aa24.6■■□□□ 1.53
CPSF3-201ENST00000238112 DUSP27Q5VZP5 1158 aa24.6■■□□□ 1.53
CPSF3-201ENST00000238112 MYOM1P52179 1685 aa24.59■■□□□ 1.53
CPSF3-201ENST00000238112 NEURL4Q96JN8 1562 aa24.59■■□□□ 1.53
CPSF3-201ENST00000238112 DEKP35659 375 aaKnown RBP24.58■■□□□ 1.53
CPSF3-201ENST00000238112 ABCA9Q8IUA7 1624 aa24.58■■□□□ 1.53
CPSF3-201ENST00000238112 KDM5AP29375 1690 aaKnown RBP24.58■■□□□ 1.53
CPSF3-201ENST00000238112 ZNF521Q96K83 1311 aa24.57■■□□□ 1.52
CPSF3-201ENST00000238112 C20orf194Q5TEA3 1177 aa24.57■■□□□ 1.52
CPSF3-201ENST00000238112 ADGRL1O94910 1474 aa24.56■■□□□ 1.52
CPSF3-201ENST00000238112 CFAP70Q5T0N1 1121 aa24.55■■□□□ 1.52
CPSF3-201ENST00000238112 MYOM2P54296 1465 aa24.55■■□□□ 1.52
CPSF3-201ENST00000238112 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.55■■□□□ 1.52
CPSF3-201ENST00000238112 MAP3K4Q9Y6R4 1608 aa24.53■■□□□ 1.52
CPSF3-201ENST00000238112 RTL5Q5HYW3 569 aaPredicted RBP24.53■■□□□ 1.52
CPSF3-201ENST00000238112 UGGT1Q9NYU2 1555 aa24.51■■□□□ 1.51
CPSF3-201ENST00000238112 CCDC146Q8IYE0 955 aa24.51■■□□□ 1.51
CPSF3-201ENST00000238112 ADGRF5Q8IZF2 1346 aa24.51■■□□□ 1.51
CPSF3-201ENST00000238112 ABCA6Q8N139 1617 aa24.5■■□□□ 1.51
CPSF3-201ENST00000238112 ERVK-7P63135 1459 aa24.5■■□□□ 1.51
CPSF3-201ENST00000238112 SLFN5Q08AF3 891 aa24.5■■□□□ 1.51
CPSF3-201ENST00000238112 MROH1Q8NDA8 1641 aa24.5■■□□□ 1.51
CPSF3-201ENST00000238112 CENPQQ7L2Z9 268 aaPredicted RBP24.49■■□□□ 1.51
CPSF3-201ENST00000238112 KDM2BQ8NHM5 1336 aa24.48■■□□□ 1.51
CPSF3-201ENST00000238112 EFCAB6Q5THR3 1501 aa24.48■■□□□ 1.51
CPSF3-201ENST00000238112 KIF1BO60333 1816 aa24.47■■□□□ 1.51
CPSF3-201ENST00000238112 SKAP1Q86WV1 359 aa24.46■■□□□ 1.51
CPSF3-201ENST00000238112 APAF1O14727 1248 aa24.46■■□□□ 1.51
CPSF3-201ENST00000238112 TRMT2AQ8IZ69 625 aaKnown RBP24.44■■□□□ 1.5
CPSF3-201ENST00000238112 CARD14Q9BXL6 1004 aa24.43■■□□□ 1.5
CPSF3-201ENST00000238112 NKTRP30414 1462 aaKnown RBP24.42■■□□□ 1.5
CPSF3-201ENST00000238112 SBNO2Q9Y2G9 1366 aa24.41■■□□□ 1.5
CPSF3-201ENST00000238112 ASXL2Q76L83 1435 aa24.41■■□□□ 1.5
CPSF3-201ENST00000238112 IFT172Q9UG01 1749 aa24.41■■□□□ 1.5
CPSF3-201ENST00000238112 E9PSI1 815 aa24.41■■□□□ 1.5
CPSF3-201ENST00000238112 NRXN1Q9ULB1 1477 aa24.41■■□□□ 1.5
CPSF3-201ENST00000238112 PPRC1Q5VV67 1664 aaKnown RBP24.41■■□□□ 1.5
CPSF3-201ENST00000238112 NGEFQ8N5V2 710 aa24.4■■□□□ 1.5
CPSF3-201ENST00000238112 DDRGK1Q96HY6 314 aa24.4■■□□□ 1.5
CPSF3-201ENST00000238112 MROH2AA6NES4 1674 aa24.39■■□□□ 1.5
CPSF3-201ENST00000238112 LMTK2Q8IWU2 1503 aa24.39■■□□□ 1.5
CPSF3-201ENST00000238112 CENPJQ9HC77 1338 aaPredicted RBP24.39■■□□□ 1.49
CPSF3-201ENST00000238112 MYO3AQ8NEV4 1616 aa24.39■■□□□ 1.49
CPSF3-201ENST00000238112 SPINK5Q9NQ38 1064 aaPredicted RBP24.39■■□□□ 1.49
CPSF3-201ENST00000238112 CHGAP10645 457 aaKnown RBP24.38■■□□□ 1.49
CPSF3-201ENST00000238112 KIDINS220Q9ULH0 1771 aa24.38■■□□□ 1.49
CPSF3-201ENST00000238112 NOS1P29475 1434 aa24.38■■□□□ 1.49
CPSF3-201ENST00000238112 ZNF518AQ6AHZ1 1483 aa24.37■■□□□ 1.49
CPSF3-201ENST00000238112 ADGRB3O60242 1522 aa24.35■■□□□ 1.49
CPSF3-201ENST00000238112 LAS1LQ9Y4W2 734 aaKnown RBP24.35■■□□□ 1.49
CPSF3-201ENST00000238112 POLR3AO14802 1390 aaPredicted RBP24.35■■□□□ 1.49
CPSF3-201ENST00000238112 SETBP1Q9Y6X0 1596 aa24.35■■□□□ 1.49
CPSF3-201ENST00000238112 BCAR3O75815 825 aa24.32■■□□□ 1.48
CPSF3-201ENST00000238112 TRAK1Q9UPV9 953 aa24.32■■□□□ 1.48
CPSF3-201ENST00000238112 FAM161AQ3B820 660 aa24.32■■□□□ 1.48
CPSF3-201ENST00000238112 NSD3Q9BZ95 1437 aa24.31■■□□□ 1.48
CPSF3-201ENST00000238112 PPM1GO15355 546 aaPredicted RBP24.31■■□□□ 1.48
CPSF3-201ENST00000238112 MORC1Q86VD1 984 aa24.31■■□□□ 1.48
CPSF3-201ENST00000238112 USP35Q9P2H5 1018 aa24.3■■□□□ 1.48
CPSF3-201ENST00000238112 NEFMP07197 916 aa24.29■■□□□ 1.48
CPSF3-201ENST00000238112 NPATQ14207 1427 aa24.28■■□□□ 1.48
CPSF3-201ENST00000238112 C14orf93Q9H972 538 aaKnown RBP24.28■■□□□ 1.48
CPSF3-201ENST00000238112 DMRT2Q9Y5R5 561 aa24.28■■□□□ 1.48
CPSF3-201ENST00000238112 WWC1Q8IX03 1113 aa24.27■■□□□ 1.48
CPSF3-201ENST00000238112 GGT6Q6P531 493 aa24.27■■□□□ 1.48
CPSF3-201ENST00000238112 RGS3P49796 1198 aa24.26■■□□□ 1.47
CPSF3-201ENST00000238112 NPM1P06748 294 aaKnown RBP eCLIP24.26■■□□□ 1.47
CPSF3-201ENST00000238112 C8orf34Q49A92 452 aa24.26■■□□□ 1.47
CPSF3-201ENST00000238112 SLC12A5Q9H2X9 1139 aa24.26■■□□□ 1.47
CPSF3-201ENST00000238112 TNNT2P45379 298 aaPredicted RBP24.25■■□□□ 1.47
CPSF3-201ENST00000238112 NINLQ9Y2I6 1382 aa24.25■■□□□ 1.47
CPSF3-201ENST00000238112 QRICH2Q9H0J4 1663 aa24.24■■□□□ 1.47
CPSF3-201ENST00000238112 CANXP27824 592 aaKnown RBP24.24■■□□□ 1.47
CPSF3-201ENST00000238112 PDE3AQ14432 1141 aa24.24■■□□□ 1.47
CPSF3-201ENST00000238112 CGNL1Q0VF96 1302 aa24.24■■□□□ 1.47
CPSF3-201ENST00000238112 RPGRIP1LQ68CZ1 1315 aa24.24■■□□□ 1.47
CPSF3-201ENST00000238112 DAXXQ9UER7 740 aaPredicted RBP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms