RNA–Protein interactions for RNA: ENST00000229829.6

HLA-DOA-201, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

APPRIS P1 BASIC

Gene HLA-DOA, Length 3,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-201ENST00000229829 DHX29Q7Z478 1369 aaKnown RBP12.75□□□□□ -0.37
HLA-DOA-201ENST00000229829 MED14O60244 1454 aa12.75□□□□□ -0.37
HLA-DOA-201ENST00000229829 USP47Q96K76 1375 aa12.74□□□□□ -0.37
HLA-DOA-201ENST00000229829 XIRP1Q702N8 1843 aaKnown RBP12.74□□□□□ -0.37
HLA-DOA-201ENST00000229829 ERICH6BQ5W0A0 696 aa12.74□□□□□ -0.37
HLA-DOA-201ENST00000229829 DIP2AQ14689 1571 aa12.73□□□□□ -0.37
HLA-DOA-201ENST00000229829 SLIT1O75093 1534 aa12.71□□□□□ -0.37
HLA-DOA-201ENST00000229829 CLTCQ00610 1675 aaKnown RBP12.71□□□□□ -0.38
HLA-DOA-201ENST00000229829 LAS1LQ9Y4W2 734 aaKnown RBP12.71□□□□□ -0.38
HLA-DOA-201ENST00000229829 ALKQ9UM73 1620 aa12.7□□□□□ -0.38
HLA-DOA-201ENST00000229829 DUOX2Q9NRD8 1548 aa12.7□□□□□ -0.38
HLA-DOA-201ENST00000229829 KDM2AQ9Y2K7 1162 aa12.7□□□□□ -0.38
HLA-DOA-201ENST00000229829 CEP152O94986 1710 aa12.7□□□□□ -0.38
HLA-DOA-201ENST00000229829 ANP32AP39687 249 aaKnown RBP12.7□□□□□ -0.38
HLA-DOA-201ENST00000229829 ERBINQ96RT1 1412 aa12.69□□□□□ -0.38
HLA-DOA-201ENST00000229829 ANKRD50Q9ULJ7 1429 aa12.69□□□□□ -0.38
HLA-DOA-201ENST00000229829 ZBTB47Q9UFB7 747 aaPredicted RBP12.69□□□□□ -0.38
HLA-DOA-201ENST00000229829 NUP155O75694 1391 aa12.68□□□□□ -0.38
HLA-DOA-201ENST00000229829 ANKRD30AQ9BXX3 1397 aa12.68□□□□□ -0.38
HLA-DOA-201ENST00000229829 CARD11Q9BXL7 1154 aa12.67□□□□□ -0.38
HLA-DOA-201ENST00000229829 ARHGAP23Q9P227 1491 aa12.66□□□□□ -0.38
HLA-DOA-201ENST00000229829 ST20-MTHFSA0A0A6YYL1 179 aa12.66□□□□□ -0.38
HLA-DOA-201ENST00000229829 PNISRQ8TF01 805 aaKnown RBP12.66□□□□□ -0.38
HLA-DOA-201ENST00000229829 NUDCQ9Y266 331 aa12.66□□□□□ -0.38
HLA-DOA-201ENST00000229829 LTBP4Q8N2S1 1624 aa12.66□□□□□ -0.38
HLA-DOA-201ENST00000229829 SYCP2Q9BX26 1530 aa12.66□□□□□ -0.38
HLA-DOA-201ENST00000229829 SMG6Q86US8 1419 aaKnown RBP12.65□□□□□ -0.38
HLA-DOA-201ENST00000229829 HNRNPMP52272 730 aaKnown RBP eCLIP12.65□□□□□ -0.38
HLA-DOA-201ENST00000229829 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
HLA-DOA-201ENST00000229829 TMC1Q8TDI8 760 aa12.64□□□□□ -0.39
HLA-DOA-201ENST00000229829 DCAF11Q8TEB1 546 aa12.64□□□□□ -0.39
HLA-DOA-201ENST00000229829 PPP6R1Q9UPN7 881 aa12.63□□□□□ -0.39
HLA-DOA-201ENST00000229829 PTPRTO14522 1441 aa12.63□□□□□ -0.39
HLA-DOA-201ENST00000229829 PTPRMP28827 1452 aa12.63□□□□□ -0.39
HLA-DOA-201ENST00000229829 SETD1BQ9UPS6 1966 aaKnown RBP12.62□□□□□ -0.39
HLA-DOA-201ENST00000229829 USP54Q70EL1 1684 aa12.62□□□□□ -0.39
HLA-DOA-201ENST00000229829 CCDC141Q6ZP82 1450 aa12.62□□□□□ -0.39
HLA-DOA-201ENST00000229829 SPHKAPQ2M3C7 1700 aa12.62□□□□□ -0.39
HLA-DOA-201ENST00000229829 ABCC3O15438 1527 aa12.62□□□□□ -0.39
HLA-DOA-201ENST00000229829 TSPY4P0CV99 314 aa12.61□□□□□ -0.39
HLA-DOA-201ENST00000229829 TSPY10P0CW01 314 aa12.61□□□□□ -0.39
HLA-DOA-201ENST00000229829 TMEM131LA2VDJ0 1609 aa12.61□□□□□ -0.39
HLA-DOA-201ENST00000229829 PHF23Q9BUL5 403 aaPredicted RBP12.61□□□□□ -0.39
HLA-DOA-201ENST00000229829 UHRF1BP1Q6BDS2 1440 aa12.61□□□□□ -0.39
HLA-DOA-201ENST00000229829 RALGAPBQ86X10 1494 aa12.61□□□□□ -0.39
HLA-DOA-201ENST00000229829 RNF123Q5XPI4 1314 aa12.6□□□□□ -0.39
HLA-DOA-201ENST00000229829 NEFMP07197 916 aa12.6□□□□□ -0.39
HLA-DOA-201ENST00000229829 ARID4BQ4LE39 1312 aaPredicted RBP12.6□□□□□ -0.39
HLA-DOA-201ENST00000229829 CEP170BQ9Y4F5 1589 aaPredicted RBP12.6□□□□□ -0.39
HLA-DOA-201ENST00000229829 XRN1Q8IZH2 1706 aaKnown RBP12.59□□□□□ -0.39
HLA-DOA-201ENST00000229829 KIAA1210Q9ULL0 1709 aa12.59□□□□□ -0.39
HLA-DOA-201ENST00000229829 E9PCH4 1651 aa12.58□□□□□ -0.4
HLA-DOA-201ENST00000229829 KIF15Q9NS87 1388 aa12.58□□□□□ -0.4
HLA-DOA-201ENST00000229829 UBE2Q2Q8WVN8 375 aa12.58□□□□□ -0.4
HLA-DOA-201ENST00000229829 RGL3Q3MIN7 710 aa12.58□□□□□ -0.4
HLA-DOA-201ENST00000229829 STRCP1A6NGW2 1772 aa12.57□□□□□ -0.4
HLA-DOA-201ENST00000229829 ROCK2O75116 1388 aaKnown RBP12.57□□□□□ -0.4
HLA-DOA-201ENST00000229829 NRXN3Q9Y4C0 1643 aa12.57□□□□□ -0.4
HLA-DOA-201ENST00000229829 NBPF1Q3BBV0 1214 aa12.56□□□□□ -0.4
HLA-DOA-201ENST00000229829 CHD2O14647 1828 aaKnown RBP12.56□□□□□ -0.4
HLA-DOA-201ENST00000229829 IQGAP1P46940 1657 aa12.56□□□□□ -0.4
HLA-DOA-201ENST00000229829 BRPF3Q9ULD4 1205 aa12.56□□□□□ -0.4
HLA-DOA-201ENST00000229829 LRPPRCP42704 1394 aaKnown RBP12.55□□□□□ -0.4
HLA-DOA-201ENST00000229829 MYBBP1AQ9BQG0 1328 aaKnown RBP12.55□□□□□ -0.4
HLA-DOA-201ENST00000229829 PPLO60437 1756 aa12.55□□□□□ -0.4
HLA-DOA-201ENST00000229829 NLRP1Q9C000 1473 aa12.54□□□□□ -0.4
HLA-DOA-201ENST00000229829 ARHGAP5Q13017 1502 aa12.54□□□□□ -0.4
HLA-DOA-201ENST00000229829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.54□□□□□ -0.4
HLA-DOA-201ENST00000229829 SETBP1Q9Y6X0 1596 aa12.53□□□□□ -0.4
HLA-DOA-201ENST00000229829 BRD4O60885 1362 aaPredicted RBP12.52□□□□□ -0.4
HLA-DOA-201ENST00000229829 RALBP1Q15311 655 aa12.52□□□□□ -0.4
HLA-DOA-201ENST00000229829 ADGRB3O60242 1522 aa12.52□□□□□ -0.41
HLA-DOA-201ENST00000229829 EXOC6Q8TAG9 804 aa12.52□□□□□ -0.41
HLA-DOA-201ENST00000229829 IPO9Q96P70 1041 aaKnown RBP12.52□□□□□ -0.41
HLA-DOA-201ENST00000229829 CDCA7LQ96GN5 454 aa12.5□□□□□ -0.41
HLA-DOA-201ENST00000229829 PER1O15534 1290 aaPredicted RBP12.5□□□□□ -0.41
HLA-DOA-201ENST00000229829 CC2D1BQ5T0F9 858 aaKnown RBP12.5□□□□□ -0.41
HLA-DOA-201ENST00000229829 RRP1P56182 461 aaKnown RBP12.49□□□□□ -0.41
HLA-DOA-201ENST00000229829 PKNOX2Q96KN3 472 aa12.49□□□□□ -0.41
HLA-DOA-201ENST00000229829 CCDC144AA2RUR9 1427 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 A2ML1A8K2U0 1454 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 NLRP13Q86W25 1043 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 ARXQ96QS3 562 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 RCAN3Q9UKA8 241 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 A2MP01023 1474 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 CPS1P31327 1500 aa12.48□□□□□ -0.41
HLA-DOA-201ENST00000229829 PARD3Q8TEW0 1356 aa12.47□□□□□ -0.41
HLA-DOA-201ENST00000229829 KTN1Q86UP2 1357 aaKnown RBP12.47□□□□□ -0.41
HLA-DOA-201ENST00000229829 DISP3Q9P2K9 1392 aa12.47□□□□□ -0.41
HLA-DOA-201ENST00000229829 NOS1P29475 1434 aa12.47□□□□□ -0.41
HLA-DOA-201ENST00000229829 CYB5RLQ6IPT4 315 aa12.46□□□□□ -0.41
HLA-DOA-201ENST00000229829 TRPM2O94759 1503 aa12.46□□□□□ -0.41
HLA-DOA-201ENST00000229829 TRPM1Q7Z4N2 1603 aa12.46□□□□□ -0.41
HLA-DOA-201ENST00000229829 TESK2Q96S53 571 aa12.46□□□□□ -0.41
HLA-DOA-201ENST00000229829 CRYBG1Q9Y4K1 1723 aa12.46□□□□□ -0.42
HLA-DOA-201ENST00000229829 PLIN1O60240 522 aa12.46□□□□□ -0.42
HLA-DOA-201ENST00000229829 COL22A1Q8NFW1 1626 aaPredicted RBP12.45□□□□□ -0.42
HLA-DOA-201ENST00000229829 TULP1O00294 542 aaPredicted RBP12.45□□□□□ -0.42
HLA-DOA-201ENST00000229829 PANK3Q9H999 370 aa12.45□□□□□ -0.42
HLA-DOA-201ENST00000229829 TRAPPC8Q9Y2L5 1435 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms