RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 GPR63Q9BZJ6 419 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 OSGEPL1Q9H4B0 414 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TMEM51Q9NW97 253 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SELENONQ9NZV5 590 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PCDHB15Q9Y5E8 787 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 M0QYV0 167 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SRGAP2O75044 1071 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CASP6P55212 293 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PRAMEP78395 509 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NNTQ13423 1086 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CNKSR3Q6P9H4 555 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TMTC3Q6ZXV5 915 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 WDR48Q8TAF3 677 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 HASPINQ8TF76 798 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 GRK7Q8WTQ7 553 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 HPS3Q969F9 1004 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TRAIPQ9BWF2 469 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 HACD3Q9P035 362 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SAE1Q9UBE0 346 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NRBP1Q9UHY1 535 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 LCMT1Q9UIC8 334 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF148Q9UQR1 794 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ZKSCAN5Q9Y2L8 839 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ARVCFO00192 962 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 RFC1P35251 1148 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CLCN3P51790 818 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 FOXO4P98177 505 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 DNM1Q05193 864 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 KARSQ15046 597 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PCBP1Q15365 356 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CCDC105Q8IYK2 499 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PDCD7Q8N8D1 485 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TSTD1Q8NFU3 115 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ULK4Q96C45 1275 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NRBF2Q96F24 287 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NLNQ9BYT8 704 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 UBE2TQ9NPD8 197 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 HPS5Q9UPZ3 1129 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 UMODL1Q5DID0 1318 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ESPNB1AK53 854 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PSMD12O00232 456 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 MMP3P08254 477 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PDHBP11177 359 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PSMA2P25787 234 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NOP14P78316 857 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 RBBP5Q15291 538 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 LY6KQ17RY6 165 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 C20orf194Q5TEA3 1177 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 FYB2Q5VWT5 728 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 C16orf59Q7L2K0 433 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 REPS2Q8NFH8 660 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CDC26Q8NHZ8 85 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 BLZF1Q9H2G9 400 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 C17orf75Q9HAS0 396 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 BARHL2Q9NY43 387 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 NDOR1Q9UHB4 597 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PRRC2BQ5JSZ5 2229 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CSH1P0DML2 217 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 CSH2P0DML3 217 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SMPD1P17405 629 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 FGFR2P21802 821 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ENOSF1Q7L5Y1 443 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 TAS2R42Q7RTR8 314 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PABPC5Q96DU9 382 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 UROC1Q96N76 676 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SLC4A9Q96Q91 983 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 SPZ1Q9BXG8 430 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 IDI2Q9BXS1 227 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 PXMP2Q9NR77 195 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 UTP11Q9Y3A2 253 aaKnown RBP5.3□□□□□ -1.56
SCN1A-218ENST00000640036 RGS12O14924 1447 aa5.3□□□□□ -1.56
SCN1A-218ENST00000640036 ATRNO75882 1429 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 IFRD1O00458 451 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TBC1D12O60347 775 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 LRRN2O75325 713 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 USP2O75604 605 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CALB1P05937 261 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 YBX3P16989 372 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 GRK3P35626 688 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RRAGAQ7L523 313 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 RASAL3Q86YV0 1011 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 NRSN1Q8IZ57 195 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CARNMT1Q8N4J0 409 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 WHAMMQ8TF30 809 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 KIAA1143Q96AT1 154 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 INTS4Q96HW7 963 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 UBXN6Q9BZV1 441 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 SARS2Q9NP81 518 aaKnown RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ZDHHC4Q9NPG8 344 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 DIABLOQ9NR28 239 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 DZANK1Q9NVP4 752 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 C6orf203Q9P0P8 240 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 TEKT2Q9UIF3 430 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 PER1O15534 1290 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ZNF202O95125 648 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 KELP23276 732 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 CHKAP35790 457 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 MAGEA1P43355 309 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 ASPHQ12797 758 aa5.29□□□□□ -1.56
SCN1A-218ENST00000640036 MTMR3Q13615 1198 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms