RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 LMNB2Q03252 620 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 TWF1Q12792 350 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 NBR1Q14596 966 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 VITQ6UXI7 678 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 DAW1Q8N136 415 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 SNX29Q8TEQ0 813 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 FAM3CQ92520 227 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 SMARCD2Q92925 531 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 CHRDQ9H2X0 955 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 FOXP1Q9H334 677 aaPredicted RBP21.23■□□□□ 0.99
CLN3-262ENST00000637699 TMEM134Q9H6X4 195 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 LMAN1LQ9HAT1 526 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 ZNF334Q9HCZ1 680 aaPredicted RBP21.23■□□□□ 0.99
CLN3-262ENST00000637699 KMT5AQ9NQR1 393 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 CEP72Q9P209 647 aa21.23■□□□□ 0.99
CLN3-262ENST00000637699 CDV3Q9UKY7 258 aaKnown RBP21.23■□□□□ 0.99
CLN3-262ENST00000637699 PRR5-ARHGAP8B1AHC4 643 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 E9PMD0 336 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 MCF2P10911 925 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 PSMC3P17980 439 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 MCM4P33991 863 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 ARHGAP8P85298 464 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 DMP1Q13316 513 aaPredicted RBP21.22■□□□□ 0.99
CLN3-262ENST00000637699 GNL2Q13823 731 aaKnown RBP21.22■□□□□ 0.99
CLN3-262ENST00000637699 LPAL2Q16609 132 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 MAP4K3Q8IVH8 894 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 C4orf32Q8N8J7 132 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 SUSD3Q96L08 255 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 TBC1D32Q96NH3 1257 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 CNTNAP3BQ96NU0 1288 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 CNTNAP3Q9BZ76 1288 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 CNTN3Q9P232 1028 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 ARHGAP28Q9P2N2 729 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 GMEB2Q9UKD1 530 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 PIAS3Q9Y6X2 628 aa21.22■□□□□ 0.99
CLN3-262ENST00000637699 TPRP12270 2363 aaKnown RBP21.22■□□□□ 0.99
CLN3-262ENST00000637699 MEFVO15553 781 aaPredicted RBP21.21■□□□□ 0.99
CLN3-262ENST00000637699 MOSPD3O75425 235 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 TGM1P22735 817 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 NRLP54845 237 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 SEZ6Q53EL9 994 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 ZNF280DQ6N043 979 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 MPZL3Q6UWV2 235 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 CCDC83Q8IWF9 413 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 DDX12PQ92771 950 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 ZBTB45Q96K62 511 aaPredicted RBP21.21■□□□□ 0.99
CLN3-262ENST00000637699 PARD6AQ9NPB6 346 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 AFF4Q9UHB7 1163 aaKnown RBP21.21■□□□□ 0.99
CLN3-262ENST00000637699 RAB23Q9ULC3 237 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 DNM3Q9UQ16 869 aa21.21■□□□□ 0.99
CLN3-262ENST00000637699 RBM19Q9Y4C8 960 aaKnown RBP21.21■□□□□ 0.99
CLN3-262ENST00000637699 DCDC2BA2VCK2 349 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 SFI1A8K8P3 1242 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 ABLIM1O14639 778 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 ZNF263O14978 683 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 SLC16A4O15374 487 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 TDGF1P13385 188 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 CPB1P15086 417 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 PROZP22891 400 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 PDIA5Q14554 519 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 PPP2R5DQ14738 602 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 ERICH6BQ5W0A0 696 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 RNF19BQ6ZMZ0 732 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 APPL2Q8NEU8 664 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 ZSCAN18Q8TBC5 510 aaPredicted RBP21.2■□□□□ 0.98
CLN3-262ENST00000637699 RUSC1Q9BVN2 902 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 ASAH2Q9NR71 780 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 NOL7Q9UMY1 257 aaKnown RBP21.2■□□□□ 0.98
CLN3-262ENST00000637699 EPG5Q9HCE0 2579 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 CACNA1BQ00975 2339 aa21.2■□□□□ 0.98
CLN3-262ENST00000637699 TICRRQ7Z2Z1 1910 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 CITO14578 2027 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 PP2D1A8MPX8 630 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 CCNE1P24864 410 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 MARCKSP29966 332 aaPredicted RBP21.19■□□□□ 0.98
CLN3-262ENST00000637699 SPEM2Q0P670 501 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 TEAD2Q15562 447 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 TMEM130Q8N3G9 435 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 FBXO18Q8NFZ0 1043 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 DEPDC1BQ8WUY9 529 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 DRC1Q96MC2 740 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 SLITRK6Q9H5Y7 841 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 TRPV5Q9NQA5 729 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 ANKFY1Q9P2R3 1169 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 TUBGCP4Q9UGJ1 667 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 STK24Q9Y6E0 443 aa21.19■□□□□ 0.98
CLN3-262ENST00000637699 CDC25AP30304 524 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 TRAPPC10P48553 1259 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 CCR3P51677 355 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 MAPK7Q13164 816 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 PTGDRQ13258 359 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 SLC10A6Q3KNW5 377 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 RINT1Q6NUQ1 792 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 MAMSTRQ6ZN01 415 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 PRR23BQ6ZRT6 265 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 MFSD6LQ8IWD5 586 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 IGSF22Q8N9C0 903 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 LEMD2Q8NC56 503 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 RAB34Q9BZG1 259 aa21.18■□□□□ 0.98
CLN3-262ENST00000637699 MAFFQ9ULX9 164 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms