RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 M0QZQ0 153 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 CALUO43852 315 aaPredicted RBP19.79■□□□□ 0.76
CLN3-259ENST00000637551 LTBRP36941 435 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 SNRNP35Q16560 246 aaKnown RBP19.79■□□□□ 0.76
CLN3-259ENST00000637551 EDRF1Q3B7T1 1238 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 CD300LGQ6UXG3 332 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 CYP26C1Q6V0L0 522 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 USP37Q86T82 979 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 WDR49Q8IV35 697 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 APPL2Q8NEU8 664 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 SPATA18Q8TC71 538 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 C18orf25Q96B23 403 aaPredicted RBP19.79■□□□□ 0.76
CLN3-259ENST00000637551 MSLNLQ96KJ4 702 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 TUBGCP4Q9UGJ1 667 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 ITGA11Q9UKX5 1188 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 MAFFQ9ULX9 164 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 NUB1Q9Y5A7 615 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 HCFC2Q9Y5Z7 792 aa19.79■□□□□ 0.76
CLN3-259ENST00000637551 PI4K2BG5E9Z4 385 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 PIRO00625 290 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 CLASP2O75122 1294 aaKnown RBP19.78■□□□□ 0.76
CLN3-259ENST00000637551 GLP2RO95838 553 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 NFICP08651 508 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 CNPP09543 421 aaKnown RBP19.78■□□□□ 0.76
CLN3-259ENST00000637551 RPL13P26373 211 aaKnown RBP19.78■□□□□ 0.76
CLN3-259ENST00000637551 AP3M2P53677 418 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 MCCD1P59942 119 aaPredicted RBP19.78■□□□□ 0.76
CLN3-259ENST00000637551 PNOCQ13519 176 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 TPRNQ4KMQ1 711 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 FAM171A1Q5VUB5 890 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 NELFCDQ8IXH7 590 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 LRRC52Q8N7C0 313 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 TRIML1Q8N9V2 468 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 SMRP1Q8NCR6 262 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 C3orf58Q8NDZ4 430 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 SAAL1Q96ER3 474 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 ZNF560Q96MR9 790 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 KLHL5Q96PQ7 755 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 IKZF4Q9H2S9 585 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 PLEKHA4Q9H4M7 779 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 GOLGA2P5Q9HBQ8 144 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 PCDHA5Q9Y5H7 936 aa19.78■□□□□ 0.76
CLN3-259ENST00000637551 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.77■□□□□ 0.76
CLN3-259ENST00000637551 F8W810 466 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 GOLGA6L22H0YM25 854 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 H7C4K7 107 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 TBX10O75333 385 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 TYMPP19971 482 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 CLCN4P51793 760 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 CLDN10P78369 228 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 ITIH3Q06033 890 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 SMAD4Q13485 552 aaKnown RBP19.77■□□□□ 0.76
CLN3-259ENST00000637551 PSMD6Q15008 389 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 ZCWPW2Q504Y3 356 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 C9orf57Q5W0N0 161 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 SLC22A17Q8WUG5 538 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 MFSD14AQ96MC6 490 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 MTRRQ9UBK8 725 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 DSEQ9UL01 958 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 PCDHB8Q9UN66 801 aa19.77■□□□□ 0.76
CLN3-259ENST00000637551 SCN1AP35498 2009 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 TEX28O15482 410 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 EXOC3O60645 756 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 GADD45BO75293 160 aaPredicted RBP19.76■□□□□ 0.75
CLN3-259ENST00000637551 KCNA5P22460 613 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 CYP24A1Q07973 514 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 STIM1Q13586 685 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 MRPL58Q14197 206 aaKnown RBP19.76■□□□□ 0.75
CLN3-259ENST00000637551 PSMD5Q16401 504 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 RTP2Q5QGT7 225 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 SLC8B1Q6J4K2 584 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 EFCAB13Q8IY85 973 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 CMASQ8NFW8 434 aaPredicted RBP19.76■□□□□ 0.75
CLN3-259ENST00000637551 LNX1Q8TBB1 728 aaPredicted RBP19.76■□□□□ 0.75
CLN3-259ENST00000637551 RIN2Q8WYP3 895 aaPredicted RBP19.76■□□□□ 0.75
CLN3-259ENST00000637551 MKNK1Q9BUB5 465 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 INTS13Q9NVM9 706 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 DPP3Q9NY33 737 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 CLEC1BQ9P126 229 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 PRKAG3Q9UGI9 489 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 CD207Q9UJ71 328 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 PCDHGC5Q9Y5F6 944 aa19.76■□□□□ 0.75
CLN3-259ENST00000637551 OAZ2O95190 189 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 GLUD1P00367 558 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 NR3C1P04150 777 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 CYP11A1P05108 521 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 POU2F2P09086 479 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 KLRC2P26717 231 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 MCM4P33991 863 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 LILRA4P59901 499 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 LRRC63Q05C16 580 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 DUOXA2Q1HG44 320 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 ANKRD54Q6NXT1 300 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 TAS1R1Q7RTX1 841 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 RBM23Q86U06 439 aaKnown RBP19.75■□□□□ 0.75
CLN3-259ENST00000637551 CBWD2Q8IUF1 395 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 FAM212AQ96EL1 285 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 ANKRD36BP1Q96IX9 119 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 FNBP1Q96RU3 617 aa19.75■□□□□ 0.75
CLN3-259ENST00000637551 PCIF1Q9H4Z3 704 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms