RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 PBX2P40425 430 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 FXR1P51114 621 aaKnown RBP eCLIP15.57■□□□□ 0.08
LINC00339-208ENST00000634934 RABGGTBP53611 331 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 CCZ1BP86790 482 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 CCZ1P86791 482 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-208ENST00000634934 UBXN1Q04323 297 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 SOX4Q06945 474 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-208ENST00000634934 CETN1Q12798 172 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 TRPC3Q13507 836 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 ZACNQ401N2 412 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 HERC6Q8IVU3 1022 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 C1orf127Q8N9H9 656 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 PHOSPHO2Q8TCD6 241 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 CHD9Q3L8U1 2897 aa15.57■□□□□ 0.08
LINC00339-208ENST00000634934 A0A1B0GTH6 734 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 CASTOR2A6NHX0 329 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 CCP110O43303 1012 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 ITGB3P05106 788 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 TNNT1P13805 278 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 CYP3A5P20815 502 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 PIK3CAP42336 1068 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 LRMPQ12912 555 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 TUSC3Q13454 348 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 BTG3Q14201 252 aaPredicted RBP15.56■□□□□ 0.08
LINC00339-208ENST00000634934 NAB2Q15742 525 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 ZNF280BQ86YH2 543 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 LRRC43Q8N309 656 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 TAS1R2Q8TE23 839 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 RSPH1Q8WYR4 309 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 CRACR2AQ9BSW2 395 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.56■□□□□ 0.08
LINC00339-208ENST00000634934 CACNG4Q9UBN1 327 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 ITGA11Q9UKX5 1188 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 AGAP1Q9UPQ3 857 aa15.56■□□□□ 0.08
LINC00339-208ENST00000634934 TEX33O43247 280 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 CBFA2T2O43439 604 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 NRDCO43847 1150 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 TLL1O43897 1013 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 DDHD2O94830 711 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 HLA-DRAP01903 254 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 MYOGP15173 224 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 POLR2BP30876 1174 aaKnown RBP15.55■□□□□ 0.08
LINC00339-208ENST00000634934 RBP5P82980 135 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 NCOA4Q13772 614 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 SPOUT1Q5T280 376 aaKnown RBP15.55■□□□□ 0.08
LINC00339-208ENST00000634934 SCARA3Q6AZY7 606 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 C15orf39Q6ZRI6 1047 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 FBXL13Q8NEE6 735 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 RABGGTAQ92696 567 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 ZNF689Q96CS4 500 aaPredicted RBP15.55■□□□□ 0.08
LINC00339-208ENST00000634934 XPO4Q9C0E2 1151 aaKnown RBP15.55■□□□□ 0.08
LINC00339-208ENST00000634934 HCSTQ9UBK5 93 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 SIX4Q9UIU6 781 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 ANK1P16157 1881 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 RALGAPA2Q2PPJ7 1873 aa15.55■□□□□ 0.08
LINC00339-208ENST00000634934 TRIP11Q15643 1979 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 P4HA2O15460 535 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 B4GALT3O60512 393 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 ZC3H11AO75152 810 aaKnown RBP eCLIP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 VNN1O95497 513 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 CST3P01034 146 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 OR1G1P47890 313 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 NR1I3Q14994 352 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 PTPN21Q16825 1174 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 C9orf57Q5W0N0 161 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 GBP6Q6ZN66 633 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 CMTR2Q8IYT2 770 aaKnown RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 CCDC112Q8NEF3 446 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 PCMTD1Q96MG8 357 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 PBX4Q9BYU1 374 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 NRDE2Q9H7Z3 1164 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 RC3H2Q9HBD1 1191 aaKnown RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 GCNT4Q9P109 453 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 DNAJB4Q9UDY4 337 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 INSL6Q9Y581 213 aa15.54■□□□□ 0.08
LINC00339-208ENST00000634934 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.54■□□□□ 0.08
LINC00339-208ENST00000634934 PODXLO00592 558 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 PPEF2O14830 753 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 PMM2O15305 246 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 SKILP12757 684 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 LRPAP1P30533 357 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 RPL9P32969 192 aaKnown RBP15.53■□□□□ 0.08
LINC00339-208ENST00000634934 CLCNKBP51801 687 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 MYL6P60660 151 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 HTRA4P83105 476 aaPredicted RBP15.53■□□□□ 0.08
LINC00339-208ENST00000634934 DSC1Q08554 894 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 EXOC3L4Q17RC7 722 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 COLGALT2Q8IYK4 626 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 CCAR2Q8N163 923 aaKnown RBP15.53■□□□□ 0.08
LINC00339-208ENST00000634934 SEMA4DQ92854 862 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 ELMO3Q96BJ8 720 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 DDX27Q96GQ7 796 aaKnown RBP15.53■□□□□ 0.08
LINC00339-208ENST00000634934 UROC1Q96N76 676 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 RAD9AQ99638 391 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 PAAF1Q9BRP4 392 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 PI4K2AQ9BTU6 479 aa15.53■□□□□ 0.08
LINC00339-208ENST00000634934 INTS2Q9H0H0 1204 aaKnown RBP15.53■□□□□ 0.08
LINC00339-208ENST00000634934 RAB20Q9NX57 234 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms