RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	PI4K2B	G5E9Z4	385 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TULP1	O00294	542 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CCDC175	P0C221	793 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DLAT	P10515	647 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GNAT1	P11488	350 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARHGAP25	P42331	645 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MXI1	P50539	228 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DEFB103A	P81534	67 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMEM62	Q0P6H9	643 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PRPF4B	Q13523	1007 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KIZ	Q2M2Z5	673 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LEXM	Q3ZCV2	418 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF618	Q5T7W0	954 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LMBRD2	Q68DH5	695 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MPZL3	Q6UWV2	235 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZBTB33	Q86T24	672 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMEM192	Q8IY95	271 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SCLT1	Q96NL6	688 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SPAG5	Q96R06	1193 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TCHP	Q9BT92	498 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CDT1	Q9H211	546 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMEM8A	Q9HCN3	771 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RAPGEFL1	Q9UHV5	662 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CPSF3	Q9UKF6	684 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TFR2	Q9UP52	801 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TNFSF13B	Q9Y275	285 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CHD7	Q9P2D1	2997 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LCHN	A4D1U4	455 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GOLGA6L9	A6NEM1	432 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587		F8VZ95	297 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	OGT	O15294	1046 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TSPAN1	O60635	241 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	LCA5L	O95447	670 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	VNN1	O95497	513 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	C4BPA	P04003	597 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	HARS	P12081	509 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARF4	P18085	180 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	GTF2H1	P32780	548 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CYLC1	P35663	651 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EIF4A3	P38919	411 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	HTRA4	P83105	476 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CDC42EP1	Q00587	391 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SFMBT2	Q5VUG0	894 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TDRD10	Q5VZ19	366 aa	Known RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KRT39	Q6A163	491 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TRAF7	Q6Q0C0	670 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SERINC5	Q86VE9	423 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF410	Q86VK4	478 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	BRSK2	Q8IWQ3	736 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CCDC170	Q8IYT3	715 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FBXO22	Q8NEZ5	403 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	OR5B17	Q8NGF7	314 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TMEM40	Q8WWA1	233 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DNAJB3	Q8WWF6	145 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NLRP7	Q8WX94	980 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SEPT8	Q92599	483 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KAT5	Q92993	513 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CPB2	Q96IY4	423 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FNBP1	Q96RU3	617 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FAM49A	Q9H0Q0	323 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PDZD7	Q9H5P4	517 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	UBE2Z	Q9H832	354 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RBAK	Q9NYW8	714 aa	Predicted RBP	10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DNAJC12	Q9UKB3	198 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MYO6	Q9UM54	1294 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FAM50B	Q9Y247	325 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DAAM1	Q9Y4D1	1078 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	MYH10	P35580	1976 aa		10.25	□□□□□ -0.77
PDLIM5-223	ENST00000627587	C17orf102	A2RUQ5	167 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EIF3CL	B5ME19	914 aa	Known RBP	10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TNNT1	P13805	278 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	FGFR4	P22455	802 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RFX1	P22670	979 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	HOXA11	P31270	313 aa	Predicted RBP	10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	CYP27A1	Q02318	531 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	RAPGEF1	Q13905	1077 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ENOX2	Q16206	610 aa	Known RBP	10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZNF568	Q3ZCX4	644 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ZACN	Q401N2	412 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	HELQ	Q8TDG4	1101 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	WNT8B	Q93098	351 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PRIMPOL	Q96LW4	560 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KREMEN1	Q96MU8	473 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	EIF3C	Q99613	913 aa	Known RBP	10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SYT11	Q9BT88	431 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	IRX2	Q9BZI1	471 aa	Predicted RBP	10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TRIM10	Q9UDY6	481 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PTPRS	Q13332	1948 aa		10.24	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SSU72P8	A0A1W2PR75	194 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	NCK2	O43639	380 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	IPO7	O95373	1038 aa	Known RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	SERPING1	P05155	500 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ALAD	P13716	330 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	THPO	P40225	353 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PRKCI	P41743	596 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	KIF11	P52732	1056 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	ARID5A	Q03989	594 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	DRAP1	Q14919	205 aa	Predicted RBP	10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	PTPN14	Q15678	1187 aa		10.23	□□□□□ -0.77
PDLIM5-223	ENST00000627587	TDRD12	Q587J7	1177 aa	Known RBP	10.23	□□□□□ -0.77

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