RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 COL1A2P08123 1366 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 KAT6AQ92794 2004 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 A0A0U1RQG5 324 aaPredicted RBP21■□□□□ 0.95
CHRNA4-209ENST00000627000 MEFVO15553 781 aaPredicted RBP21■□□□□ 0.95
CHRNA4-209ENST00000627000 CD58P19256 250 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 SND1Q7KZF4 910 aaKnown RBP eCLIP21■□□□□ 0.95
CHRNA4-209ENST00000627000 ADAT2Q7Z6V5 191 aaKnown RBP21■□□□□ 0.95
CHRNA4-209ENST00000627000 CASKIN2Q8WXE0 1202 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 RPS6KC1Q96S38 1066 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 ZSWIM1Q9BR11 485 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 TRIM7Q9C029 511 aa21■□□□□ 0.95
CHRNA4-209ENST00000627000 TTC7AQ9ULT0 858 aaPredicted RBP21■□□□□ 0.95
CHRNA4-209ENST00000627000 SART1O43290 800 aaKnown RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 THAP12O43422 761 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 HOXD8P13378 290 aaPredicted RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 RRM1P23921 792 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 TNFRSF8P28908 595 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 CENPCQ03188 943 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 POU5F1BQ06416 359 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 TRPC3Q13507 836 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 FAM187BQ17R55 369 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 IQSEC1Q6DN90 963 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 IFNLR1Q8IU57 520 aaPredicted RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 IFT20Q8IY31 132 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 MSL3Q8N5Y2 521 aaKnown RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 IFT81Q8WYA0 676 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 CD101Q93033 1021 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 PDZD7Q9H5P4 517 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 RPF1Q9H9Y2 349 aaKnown RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 B4GALT4O60513 344 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 ITGBL1O95965 494 aaPredicted RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 TMOD1P28289 359 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF132P52740 706 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 IRX5P78411 483 aaPredicted RBP20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 NLRP7Q8WX94 980 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 FLRT1Q9NZU1 646 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 NFU1Q9UMS0 254 aa20.99■□□□□ 0.95
CHRNA4-209ENST00000627000 MIF4GDA9UHW6 222 aaKnown RBP20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 CCDC188H7C350 402 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 NFICP08651 508 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 STAG3L1P0CL83 205 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 ARF4P18085 180 aaPredicted RBP20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 NSFP46459 744 aaKnown RBP20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 PEX5P50542 639 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 NOMO3P69849 1222 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 TNFAIP2Q03169 654 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 DGKDQ16760 1214 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 SGSM1Q2NKQ1 1148 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF394Q53GI3 561 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 SCARA5Q6ZMJ2 495 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 RASAL3Q86YV0 1011 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 LENG1Q96BZ8 264 aaPredicted RBP20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 NIF3L1Q9GZT8 377 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 XYLT2Q9H1B5 865 aa20.98■□□□□ 0.95
CHRNA4-209ENST00000627000 DYNC1LI2O43237 492 aaPredicted RBP20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 WEE2P0C1S8 567 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 EPHB4P54760 987 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 MORN1Q5T089 497 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 MON1BQ7L1V2 547 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 UBL4BQ8N7F7 174 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ANKRD36BP1Q96IX9 119 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 C11orf70Q9BRQ4 267 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 VIPAS39Q9H9C1 493 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ERVK-5Q9HDB9 667 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 SETD4Q9NVD3 440 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 AMACRQ9UHK6 382 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ANAPC7Q9UJX3 599 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 MROH7Q68CQ1 1323 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF236Q9UL36 1845 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 LACTBL1A8MY62 500 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 SPOPO43791 374 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 TNNC2P02585 160 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF157P51786 506 aaPredicted RBP20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 GABPB1Q06547 395 aaPredicted RBP20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF699Q32M78 642 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 KIAA0319LQ8IZA0 1049 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 ZNF606Q8WXB4 792 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 SCLT1Q96NL6 688 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 CISHQ9NSE2 258 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 POLIQ9UNA4 740 aa20.97■□□□□ 0.95
CHRNA4-209ENST00000627000 FAM153BP0C7A2 387 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 FGFR4P22455 802 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 FAM153CQ494X1 144 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 CCDC102AQ96A19 550 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 WNT8AQ9H1J5 351 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 AVENQ9NQS1 362 aaPredicted RBP20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 FAM153AQ9UHL3 310 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 SIX4Q9UIU6 781 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 ZEB2O60315 1214 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 KRT19P08727 400 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 MCF2P10911 925 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 ASPAP45381 313 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 MAP2K5Q13163 448 aa20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 TAF1CQ15572 869 aaPredicted RBP20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 CELF4Q9BZC1 486 aaKnown RBP20.96■□□□□ 0.95
CHRNA4-209ENST00000627000 TSPAN1O60635 241 aa20.95■□□□□ 0.94
CHRNA4-209ENST00000627000 PYGMP11217 842 aa20.95■□□□□ 0.94
CHRNA4-209ENST00000627000 BRD2P25440 801 aaKnown RBP20.95■□□□□ 0.94
CHRNA4-209ENST00000627000 GYS2P54840 703 aa20.95■□□□□ 0.94
CHRNA4-209ENST00000627000 TMEM62Q0P6H9 643 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms