RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 Q8NA96 180 aa5.87□□□□□ -1.47
BRCA1-229ENST00000621897 Q96MF0 132 aa5.87□□□□□ -1.47
BRCA1-229ENST00000621897 SLC13A1Q9BZW2 595 aa5.87□□□□□ -1.47
BRCA1-229ENST00000621897 GALNT9Q9HCQ5 603 aa5.87□□□□□ -1.47
BRCA1-229ENST00000621897 TESQ9UGI8 421 aaKnown RBP5.87□□□□□ -1.47
BRCA1-229ENST00000621897 MTO1Q9Y2Z2 717 aaKnown RBP5.87□□□□□ -1.47
BRCA1-229ENST00000621897 MRFAP1Q9Y605 127 aa5.87□□□□□ -1.47
BRCA1-229ENST00000621897 SALL3Q9BXA9 1300 aa5.87□□□□□ -1.47
BRCA1-229ENST00000621897 AGFG2O95081 481 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 CD1AP06126 327 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 MPLP40238 635 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 CLK3P49761 638 aaKnown RBP5.86□□□□□ -1.47
BRCA1-229ENST00000621897 TLE1Q04724 770 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 UAP1L1Q3KQV9 507 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 PABPC1LQ4VXU2 614 aaKnown RBP5.86□□□□□ -1.47
BRCA1-229ENST00000621897 EFCAB2Q5VUJ9 269 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 FOXR2Q6PJQ5 311 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.86□□□□□ -1.47
BRCA1-229ENST00000621897 FAM43AQ8N2R8 423 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 CLPTM1LQ96KA5 538 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 PNKPQ96T60 521 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 PRDM13Q9H4Q3 707 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 UNKLQ9H9P5 680 aaKnown RBP5.86□□□□□ -1.47
BRCA1-229ENST00000621897 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.86□□□□□ -1.47
BRCA1-229ENST00000621897 SLC45A2Q9UMX9 530 aa5.86□□□□□ -1.47
BRCA1-229ENST00000621897 MAST3O60307 1309 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 ERN1O75460 977 aaKnown RBP5.85□□□□□ -1.47
BRCA1-229ENST00000621897 NUDT3O95989 172 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 FDXRP22570 491 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 DSC2Q02487 901 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 ATP2B3Q16720 1220 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 GEN1Q17RS7 908 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 UTP14CQ5TAP6 766 aaKnown RBP5.85□□□□□ -1.47
BRCA1-229ENST00000621897 NLGN4YQ8NFZ3 816 aaPredicted RBP5.85□□□□□ -1.47
BRCA1-229ENST00000621897 GPATCH3Q96I76 525 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 CRAMP1Q96RY5 1269 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 ALG13Q9NP73 1137 aaKnown RBP5.85□□□□□ -1.47
BRCA1-229ENST00000621897 ZNHIT2Q9UHR6 403 aa5.85□□□□□ -1.47
BRCA1-229ENST00000621897 KIAA0355O15063 1070 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 ESRRBO95718 433 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 MTHFD1P11586 935 aaKnown RBP5.84□□□□□ -1.47
BRCA1-229ENST00000621897 VAV2P52735 878 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 ADKP55263 362 aaKnown RBP5.84□□□□□ -1.47
BRCA1-229ENST00000621897 BLOC1S1P78537 153 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 MPP3Q13368 585 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 RAB39AQ14964 217 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 NSUN6Q8TEA1 469 aaKnown RBP5.84□□□□□ -1.47
BRCA1-229ENST00000621897 KLHL32Q96NJ5 620 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 VRK1Q99986 396 aaPredicted RBP5.84□□□□□ -1.47
BRCA1-229ENST00000621897 CDYLQ9Y232 598 aa5.84□□□□□ -1.47
BRCA1-229ENST00000621897 LRRC14BA6NHZ5 514 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 SLC43A1O75387 559 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 BRDTQ58F21 947 aaPredicted RBP5.83□□□□□ -1.48
BRCA1-229ENST00000621897 PPP4R3AQ6IN85 833 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 GADL1Q6ZQY3 521 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 TMIEQ8NEW7 156 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 IL17RDQ8NFM7 739 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 PACSIN1Q9BY11 444 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 RIOX1Q9H6W3 641 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 CASS4Q9NQ75 786 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 TBCCD1Q9NVR7 557 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 JKAMPQ9P055 326 aa5.83□□□□□ -1.48
BRCA1-229ENST00000621897 MYADML2A6NDP7 307 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 ZAR1LA6NP61 321 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 PTH2RP49190 550 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 SNAPC2Q13487 334 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 PTPROQ16827 1216 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 KHDC1Q4VXA5 237 aaKnown RBP5.82□□□□□ -1.48
BRCA1-229ENST00000621897 Q6ZNX1 250 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 ZNF365Q70YC5 407 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 ZNF575Q86XF7 245 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 SSH3Q8TE77 659 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 PTCD3Q96EY7 689 aaKnown RBP5.82□□□□□ -1.48
BRCA1-229ENST00000621897 MED15Q96RN5 788 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 HOMER2Q9NSB8 354 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 CALCOCO1Q9P1Z2 691 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 CTTNBP2NLQ9P2B4 639 aa5.82□□□□□ -1.48
BRCA1-229ENST00000621897 CFAP20Q9Y6A4 193 aaKnown RBP5.82□□□□□ -1.48
BRCA1-229ENST00000621897 ARHGEF17Q96PE2 2063 aaPredicted RBP5.82□□□□□ -1.48
BRCA1-229ENST00000621897 NT5C1B-RDH14C9J2C7 533 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 F2RL2O00254 374 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 MGST3O14880 152 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 MALP21145 153 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 CCND1P24385 295 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 CXCR5P32302 372 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 PRR16Q569H4 304 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 PRIMA1Q86XR5 153 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 COLGALT2Q8IYK4 626 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 SIMC1Q8NDZ2 872 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 NSUN7Q8NE18 718 aaKnown RBP5.81□□□□□ -1.48
BRCA1-229ENST00000621897 LRIG1Q96JA1 1093 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 AIFM2Q9BRQ8 373 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 KRTAP17-1Q9BYP8 105 aa5.81□□□□□ -1.48
BRCA1-229ENST00000621897 TRGV11A0A075B6L2 103 aa5.8□□□□□ -1.48
BRCA1-229ENST00000621897 E9PLN8 166 aa5.8□□□□□ -1.48
BRCA1-229ENST00000621897 RECQLP46063 649 aaPredicted RBP5.8□□□□□ -1.48
BRCA1-229ENST00000621897 FXR1P51114 621 aaKnown RBP eCLIP5.8□□□□□ -1.48
BRCA1-229ENST00000621897 MC2RQ01718 297 aa5.8□□□□□ -1.48
BRCA1-229ENST00000621897 TTC7BQ86TV6 843 aa5.8□□□□□ -1.48
BRCA1-229ENST00000621897 MIER2Q8N344 545 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms