RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CLEC1BQ9P126 229 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 PUF60Q9UHX1 559 aaKnown RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 TRAF3IP3Q9Y228 551 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 HCFC2Q9Y5Z7 792 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 DOCK8Q8NF50 2099 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 ZNF233A6NK53 670 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 LRRIQ3A6PVS8 624 aaPredicted RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 CLASP2O75122 1294 aaKnown RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 SMC2O95347 1197 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 CST3P01034 146 aaPredicted RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 TRIM49P0CI25 452 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 TRIM49CP0CI26 452 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 LRPAP1P30533 357 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 POLR2BP30876 1174 aaKnown RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 DCLRE1AQ6PJP8 1040 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 C12orf56Q8IXR9 622 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 C12orf76Q8N812 135 aaPredicted RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 LNX1Q8TBB1 728 aaPredicted RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 DDX27Q96GQ7 796 aaKnown RBP14.6□□□□□ -0.07
LINC00540-202ENST00000616974 HERC2P3Q9BVR0 1158 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 LMAN2LQ9H0V9 348 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 ASB7Q9H672 318 aa14.6□□□□□ -0.07
LINC00540-202ENST00000616974 ANO9A1A5B4 782 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 PIRO00625 290 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 WEE2P0C1S8 567 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 GLUD2P49448 558 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 LILRA4P59901 499 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 DSG1Q02413 1049 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 CTC1Q2NKJ3 1217 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 DPCR1Q3MIW9 517 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 CENPPQ6IPU0 288 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 PALB2Q86YC2 1186 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 ELOA2Q8IYF1 753 aaPredicted RBP14.59□□□□□ -0.07
LINC00540-202ENST00000616974 RSPH1Q8WYR4 309 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 BORCS6Q96GS4 357 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 DUSP9Q99956 384 aaKnown RBP14.59□□□□□ -0.07
LINC00540-202ENST00000616974 CLSTN3Q9BQT9 956 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 SLC38A7Q9NVC3 462 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 TMEM63CQ9P1W3 806 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 CTNND2Q9UQB3 1225 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 C2CD2Q9Y426 696 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 SF3B1O75533 1304 aaKnown RBP eCLIP14.59□□□□□ -0.07
LINC00540-202ENST00000616974 DMDP11532 3685 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 LDHAP00338 332 aaKnown RBP14.59□□□□□ -0.07
LINC00540-202ENST00000616974 FGFR3P22607 806 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 MCM4P33991 863 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 SMC1AQ14683 1233 aaKnown RBP14.59□□□□□ -0.07
LINC00540-202ENST00000616974 DUSP6Q16828 381 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 MFSD14AQ96MC6 490 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 KLHL5Q96PQ7 755 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 TMEM209Q96SK2 561 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 NUP62CLQ9H1M0 184 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 UBE2ZQ9H832 354 aaPredicted RBP14.59□□□□□ -0.07
LINC00540-202ENST00000616974 INTS13Q9NVM9 706 aa14.59□□□□□ -0.07
LINC00540-202ENST00000616974 TMEM189-UBE2V1I3L0A0 370 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 OR4Q2P0C623 313 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 ADAM9Q13443 819 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 COL19A1Q14993 1142 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 USP41Q3LFD5 358 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 SLC9A9Q8IVB4 645 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 CSGALNACT2Q8N6G5 542 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 PARD3BQ8TEW8 1205 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 TTPALQ9BTX7 342 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 RMND1Q9NWS8 449 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 AGAP1Q9UPQ3 857 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 NUB1Q9Y5A7 615 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 IRAK3Q9Y616 596 aa14.58□□□□□ -0.08
LINC00540-202ENST00000616974 URODP06132 367 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 KRT19P08727 400 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 ADAM15Q13444 863 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 PSMD6Q15008 389 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 KYAT1Q16773 422 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 TDRD10Q5VZ19 366 aaKnown RBP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 BEST2Q8NFU1 509 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 CCDC47Q96A33 483 aaKnown RBP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 MMRN2Q9H8L6 949 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 NGRNQ9NPE2 291 aaKnown RBP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 MRPL17Q9NRX2 175 aaKnown RBP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 VPS13AQ96RL7 3174 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 MYH10P35580 1976 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 IL18RAPO95256 599 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 VNN1O95497 513 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 TNNI1P19237 187 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 CYP3A5P20815 502 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 AARSP49588 968 aaKnown RBP eCLIP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 CLCN4P51793 760 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 PPP3CAQ08209 521 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 VARS2Q5ST30 1063 aaKnown RBP14.57□□□□□ -0.08
LINC00540-202ENST00000616974 KIAA1841Q6NSI8 718 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 TTI2Q6NXR4 508 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 NELFBQ8WX92 580 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 UROC1Q96N76 676 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 NME7Q9Y5B8 376 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 CDY1Q9Y6F8 540 aa14.57□□□□□ -0.08
LINC00540-202ENST00000616974 RFPL2O75678 378 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 TMEM191BP0C7N4 346 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 RPL9P32969 192 aaKnown RBP14.56□□□□□ -0.08
LINC00540-202ENST00000616974 PSMD5Q16401 504 aa14.56□□□□□ -0.08
LINC00540-202ENST00000616974 SYCE2Q6PIF2 218 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms