RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 GOLGA8JA6NMD2 632 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 KLRC4O43908 158 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 EPCAMP16422 314 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 SSTR3P32745 418 aaPredicted RBP20.96■□□□□ 0.95
UPF1-212ENST00000601689 MTHFRP42898 656 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 BRCC3P46736 316 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 KCNB1Q14721 858 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 PALB2Q86YC2 1186 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 GLYCTKQ8IVS8 523 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 XXYLT1Q8NBI6 393 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 VN1R2Q8NFZ6 395 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 LNX1Q8TBB1 728 aaPredicted RBP20.96■□□□□ 0.95
UPF1-212ENST00000601689 SUSD3Q96L08 255 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 TIGD1Q96MW7 591 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 FNBP1Q96RU3 617 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 OXCT2Q9BYC2 517 aaPredicted RBP20.96■□□□□ 0.95
UPF1-212ENST00000601689 ADAM7Q9H2U9 754 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 AGPAT3Q9NRZ7 376 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 DPP3Q9NY33 737 aa20.96■□□□□ 0.95
UPF1-212ENST00000601689 CALUO43852 315 aaPredicted RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 KINO60870 393 aaKnown RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 PRPF40AO75400 957 aaKnown RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 RHOBTB3O94955 611 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 NFICP08651 508 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 TMEM191BP0C7N4 346 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 PNPLA4P41247 253 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 RBM10P98175 930 aaKnown RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 TFAMQ00059 246 aaKnown RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 DPYDQ12882 1025 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 LIN9Q5TKA1 542 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 PRSS55Q6UWB4 352 aaPredicted RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 CRELD2Q6UXH1 353 aaPredicted RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 CYP26C1Q6V0L0 522 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 FMR1NBQ8N0W7 255 aaPredicted RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 C3orf58Q8NDZ4 430 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 GLIS3Q8NEA6 775 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 ANKRD36BP1Q96IX9 119 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 ZNF560Q96MR9 790 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 IKZF4Q9H2S9 585 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 MAN1C1Q9NR34 630 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 USP15Q9Y4E8 981 aaPredicted RBP20.95■□□□□ 0.94
UPF1-212ENST00000601689 BACE2Q9Y5Z0 518 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 A0A0C4DFX4 3053 aa20.95■□□□□ 0.94
UPF1-212ENST00000601689 TNFRSF10AO00220 468 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 MEFVO15553 781 aaPredicted RBP20.94■□□□□ 0.94
UPF1-212ENST00000601689 EXOC3O60645 756 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 TNNC2P02585 160 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 TKTP29401 623 aaKnown RBP20.94■□□□□ 0.94
UPF1-212ENST00000601689 STK4Q13043 487 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 CBX2Q14781 532 aaPredicted RBP20.94■□□□□ 0.94
UPF1-212ENST00000601689 RARS2Q5T160 578 aaKnown RBP20.94■□□□□ 0.94
UPF1-212ENST00000601689 ZNF280DQ6N043 979 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 SYCE2Q6PIF2 218 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 ADHFE1Q8IWW8 467 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 APOL5Q9BWW9 433 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 MTRRQ9UBK8 725 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 PCDHB8Q9UN66 801 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 VWA8A3KMH1 1905 aa20.94■□□□□ 0.94
UPF1-212ENST00000601689 I3L4J1 428 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 CLIC2O15247 247 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 TGM5O43548 720 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 ODC1P11926 461 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 RPL17P18621 184 aaKnown RBP20.93■□□□□ 0.94
UPF1-212ENST00000601689 ELF1P32519 619 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 TAF6P49848 677 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 CYP2J2P51589 502 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 YWHAHQ04917 246 aaPredicted RBP20.93■□□□□ 0.94
UPF1-212ENST00000601689 SV2CQ496J9 727 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 VARS2Q5ST30 1063 aaKnown RBP20.93■□□□□ 0.94
UPF1-212ENST00000601689 C9orf57Q5W0N0 161 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 C15orf39Q6ZRI6 1047 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 METTL23Q86XA0 190 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 C12orf56Q8IXR9 622 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 RDH13Q8NBN7 331 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 PHF7Q9BWX1 381 aaPredicted RBP20.93■□□□□ 0.94
UPF1-212ENST00000601689 PIDD1Q9HB75 910 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 DSEQ9UL01 958 aa20.93■□□□□ 0.94
UPF1-212ENST00000601689 PDXKO00764 312 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 TGFB1I1O43294 461 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 PRR29P0C7W0 189 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 OR1D2P34982 312 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 RAB33AQ14088 237 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 SNRNP35Q16560 246 aaKnown RBP20.92■□□□□ 0.94
UPF1-212ENST00000601689 DUOXA2Q1HG44 320 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 CTXN3Q4LDR2 81 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 CCDC149Q6ZUS6 474 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 RTL10Q7L3V2 364 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 GJD3Q8N144 294 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 KIAA0895Q8NCT3 520 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 KREMEN2Q8NCW0 462 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 SMARCE1Q969G3 411 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 GSDMAQ96QA5 445 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 CLSTN3Q9BQT9 956 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 S1PR5Q9H228 398 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 ZDHHC7Q9NXF8 308 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 ITGA11Q9UKX5 1188 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 NR2E1Q9Y466 385 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 CDY1Q9Y6F8 540 aa20.92■□□□□ 0.94
UPF1-212ENST00000601689 M0QZQ0 153 aa20.91■□□□□ 0.94
UPF1-212ENST00000601689 PIRO00625 290 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms