RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 HERC2P3Q9BVR0 1158 aa20.9■□□□□ 0.94
UPF1-209ENST00000600310 ITGA11Q9UKX5 1188 aa20.9■□□□□ 0.94
UPF1-209ENST00000600310 MTCH2Q9Y6C9 303 aa20.9■□□□□ 0.94
UPF1-209ENST00000600310 PPEF2O14830 753 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 IKBKBO14920 756 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 FGFR1OPO95684 399 aaKnown RBP20.89■□□□□ 0.93
UPF1-209ENST00000600310 CTSAP10619 480 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 IGFBP4P22692 258 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 PAX3P23760 479 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 IRS1P35568 1242 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 AP3M2P53677 418 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 DLG4P78352 724 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 BFSP1Q12934 665 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 STX1AQ16623 288 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 TAS1R1Q7RTX1 841 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 CXorf38Q8TB03 319 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 TCF25Q9BQ70 676 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 SRRTQ9BXP5 876 aaKnown RBP20.89■□□□□ 0.93
UPF1-209ENST00000600310 ZBP1Q9H171 429 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 NGRNQ9NPE2 291 aaKnown RBP20.89■□□□□ 0.93
UPF1-209ENST00000600310 NUB1Q9Y5A7 615 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 MYO9BQ13459 2157 aa20.89■□□□□ 0.93
UPF1-209ENST00000600310 TRAPPC3O43617 180 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 ITGB3P05106 788 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 POLR2BP30876 1174 aaKnown RBP20.88■□□□□ 0.93
UPF1-209ENST00000600310 BRCC3P46736 316 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 AARSP49588 968 aaKnown RBP eCLIP20.88■□□□□ 0.934e-6■■■■□ 24
UPF1-209ENST00000600310 RBP5P82980 135 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 BMS1Q14692 1282 aaKnown RBP20.88■□□□□ 0.93
UPF1-209ENST00000600310 TIGD5Q53EQ6 642 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 C1orf220Q5T0J3 134 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 TRAPPC11Q7Z392 1133 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 TMC7Q7Z402 723 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 MICAL1Q8TDZ2 1067 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 METTL14Q9HCE5 456 aaKnown RBP20.88■□□□□ 0.93
UPF1-209ENST00000600310 CHST7Q9NS84 486 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 SIX4Q9UIU6 781 aa20.88■□□□□ 0.93
UPF1-209ENST00000600310 COL4A4P53420 1690 aaPredicted RBP20.87■□□□□ 0.93
UPF1-209ENST00000600310 GNA14O95837 355 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 C4BPAP04003 597 aaKnown RBP20.87■□□□□ 0.93
UPF1-209ENST00000600310 FOSL2P15408 326 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 LILRA4P59901 499 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 TYRO3Q06418 890 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 USP41Q3LFD5 358 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 FAM171A1Q5VUB5 890 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 FRMD5Q7Z6J6 570 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 GPR65Q8IYL9 337 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 LRRC52Q8N7C0 313 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 SUSD3Q96L08 255 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 ENTPD7Q9NQZ7 604 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 ARMCX3Q9UH62 379 aaPredicted RBP20.87■□□□□ 0.93
UPF1-209ENST00000600310 AGAP1Q9UPQ3 857 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 IRAK3Q9Y616 596 aa20.87■□□□□ 0.93
UPF1-209ENST00000600310 PLXNA4Q9HCM2 1894 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 I3L4J1 428 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 CSPG5O95196 566 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 CXCL14O95715 111 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 URODP06132 367 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 FGFR3P22607 806 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 PNPLA4P41247 253 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 TAF6P49848 677 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 DSG1Q02413 1049 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 SMC1AQ14683 1233 aaKnown RBP20.86■□□□□ 0.93
UPF1-209ENST00000600310 KIAA0319Q5VV43 1072 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 SCARA3Q6AZY7 606 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.86■□□□□ 0.93
UPF1-209ENST00000600310 MRPL43Q8N983 215 aaKnown RBP20.86■□□□□ 0.93
UPF1-209ENST00000600310 ZNF560Q96MR9 790 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 NSUN3Q9H649 340 aaKnown RBP20.86■□□□□ 0.93
UPF1-209ENST00000600310 SSX2IPQ9Y2D8 614 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 PCDHGC5Q9Y5F6 944 aa20.86■□□□□ 0.93
UPF1-209ENST00000600310 SYN3O14994 580 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 SPTLC1O15269 473 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 LILRB3O75022 631 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 KRT19P08727 400 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 TRIM49P0CI25 452 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 TRIM49CP0CI26 452 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 GTF2H1P32780 548 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 GLUD2P49448 558 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 MARSP56192 900 aaKnown RBP20.85■□□□□ 0.93
UPF1-209ENST00000600310 PPP3CAQ08209 521 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 PTPN14Q15678 1187 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 ZACNQ401N2 412 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 CCDC40Q4G0X9 1142 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 TDRD10Q5VZ19 366 aaKnown RBP20.85■□□□□ 0.93
UPF1-209ENST00000600310 PLPP4Q5VZY2 271 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 KIAA1841Q6NSI8 718 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 C15orf39Q6ZRI6 1047 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 C11orf57Q6ZUT1 292 aaPredicted RBP20.85■□□□□ 0.93
UPF1-209ENST00000600310 SV2AQ7L0J3 742 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 ENOX1Q8TC92 643 aaKnown RBP20.85■□□□□ 0.93
UPF1-209ENST00000600310 TTPALQ9BTX7 342 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 FUCA2Q9BTY2 467 aa20.85■□□□□ 0.93
UPF1-209ENST00000600310 MRPL17Q9NRX2 175 aaKnown RBP20.85■□□□□ 0.93
UPF1-209ENST00000600310 R3HCC1Q9Y3T6 440 aaKnown RBP20.85■□□□□ 0.93
UPF1-209ENST00000600310 SYCE3A1L190 88 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 C2orf71A6NGG8 1288 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 M0QZQ0 153 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 PHACTR2O75167 634 aa20.84■□□□□ 0.93
UPF1-209ENST00000600310 CST3P01034 146 aaPredicted RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms