RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 COL4A2P08572 1712 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 ZMYM2Q9UBW7 1377 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 CCDC169A6NNP5 214 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 SFI1A8K8P3 1242 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 E9PMD0 336 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PODXLO00592 558 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PRRG1O14668 218 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 C1RP00736 705 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 XRCC6P12956 609 aaKnown RBP eCLIP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 CDC25AP30304 524 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 HOXA9P31269 272 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 CCT6AP40227 531 aaKnown RBP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 SOX9P48436 509 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PEX3P56589 373 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PRKCQQ04759 706 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 RAD51AP2Q09MP3 1159 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 ELAVL2Q12926 359 aaKnown RBP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 SRSF5Q13243 272 aaKnown RBP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 TRIM29Q14134 588 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 ZNF568Q3ZCX4 644 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PRSS36Q5K4E3 855 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 ZBTB41Q5SVQ8 909 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PRR23BQ6ZRT6 265 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 TAS1R3Q7RTX0 852 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 CCDC83Q8IWF9 413 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 DAW1Q8N136 415 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 TTC8Q8TAM2 541 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 ATRIPQ8WXE1 791 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 POLR3CQ9BUI4 534 aaPredicted RBP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 TARS2Q9BW92 718 aaKnown RBP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 C2orf40Q9H1Z8 148 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 EPC1Q9H2F5 836 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 KIAA1024Q9UPX6 916 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 PCDHGA2Q9Y5H1 932 aa9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 TIMM13Q9Y5L4 95 aaPredicted RBP9.49□□□□□ -0.89
SHKBP1-220ENST00000599716 CITO14578 2027 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 SRRM3A6NNA2 597 aaPredicted RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 CYSRT1A8MQ03 144 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 TMEM189-UBE2V1I3L0A0 370 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 EPB41L2O43491 1005 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 MOSPD3O75425 235 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 LRG1P02750 347 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 OR4Q2P0C623 313 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 OR52Z1P0C646 297 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 MYL4P12829 197 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 RPA1P27694 616 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 GDI1P31150 447 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 NPTX2P47972 431 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 GUCY2FP51841 1108 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 NEK4P51957 841 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 PFKPQ01813 784 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 SPEM2Q0P670 501 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 GAS6Q14393 721 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 UVSSAQ2YD98 709 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 DCAF4L1Q3SXM0 396 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 STXBP5Q5T5C0 1151 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 N4BP2L1Q5TBK1 243 aaPredicted RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 VITQ6UXI7 678 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 ZNF852Q6ZMS4 543 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 ANKS3Q6ZW76 656 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 KCNK18Q7Z418 384 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 ZNF687Q8N1G0 1237 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 ZBTB44Q8NCP5 570 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 CLDN23Q96B33 292 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 RSPRY1Q96DX4 576 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 IFT74Q96LB3 600 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 PGLYRP2Q96PD5 576 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 ACO2Q99798 780 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 RUSC1Q9BVN2 902 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 BRD9Q9H8M2 597 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 RBM12Q9NTZ6 932 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 DDX19AQ9NUU7 478 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 C2orf42Q9NWW7 574 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 CEP72Q9P209 647 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 ANKFY1Q9P2R3 1169 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 TUBGCP4Q9UGJ1 667 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 FBXL5Q9UKA1 691 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 FBXO4Q9UKT5 387 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 BACE2Q9Y5Z0 518 aa9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-220ENST00000599716 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 K7ERI5 159 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ABLIM1O14639 778 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 SLC16A4O15374 487 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 TBC1D4O60343 1298 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 HIP1RO75146 1068 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ECI2O75521 394 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 SOAT2O75908 522 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ABLIM3O94929 683 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 SEC24BO95487 1268 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 PTPN2P17706 415 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ELF1P32519 619 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 GRM5P41594 1212 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 SATB1Q01826 763 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ADCY1Q08828 1119 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 TWF1Q12792 350 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ANKRD1Q15327 319 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 TEAD2Q15562 447 aa9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 ZRSR1Q15695 479 aaKnown RBP9.47□□□□□ -0.89
SHKBP1-220ENST00000599716 CTXN3Q4LDR2 81 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms