RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 GJB7Q6PEY0 223 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 ARHGEF19Q8IW93 802 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 LRRC52Q8N7C0 313 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 JAKMIP2Q96AA8 810 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 FAXDC2Q96IV6 333 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 ZFP42Q96MM3 310 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 ZNF560Q96MR9 790 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 PPP1R10Q96QC0 940 aaKnown RBP16.61■□□□□ 0.25
UPF1-206ENST00000598471 BAG1Q99933 345 aaPredicted RBP16.61■□□□□ 0.25
UPF1-206ENST00000598471 NIF3L1Q9GZT8 377 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.61■□□□□ 0.25
UPF1-206ENST00000598471 TUBGCP4Q9UGJ1 667 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 SIX4Q9UIU6 781 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 PCDHB7Q9Y5E2 793 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 MEIS3P2A8K0S8 358 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 F8VZ95 297 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 H0YGN5 161 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 RNF225M0QZC1 329 aaPredicted RBP16.6■□□□□ 0.25
UPF1-206ENST00000598471 PTGESO14684 152 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 INPPL1O15357 1258 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 SYN1P17600 705 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 PNPLA4P41247 253 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 SCNN1GP51170 649 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 GUCY2FP51841 1108 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 JAM2P57087 298 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 YWHAEP62258 255 aaKnown RBP16.6■□□□□ 0.25
UPF1-206ENST00000598471 CUL2Q13617 745 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 DRAP1Q14919 205 aaPredicted RBP16.6■□□□□ 0.25
UPF1-206ENST00000598471 ASIC2Q16515 512 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 TMTC1Q8IUR5 882 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 ABI1Q8IZP0 508 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 HELQQ8TDG4 1101 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 C18orf25Q96B23 403 aaPredicted RBP16.6■□□□□ 0.25
UPF1-206ENST00000598471 HPDLQ96IR7 371 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 VRTNQ9H8Y1 702 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 KANSL3Q9P2N6 904 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 ZMYND8Q9ULU4 1186 aaPredicted RBP16.6■□□□□ 0.25
UPF1-206ENST00000598471 PLAGL2Q9UPG8 496 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 INPP5FQ9Y2H2 1132 aa16.6■□□□□ 0.25
UPF1-206ENST00000598471 ABHD14A-ACY1A0A1B0GW23 586 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 LRRN2O75325 713 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 FERP16591 822 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 LRPAP1P30533 357 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 HNRNPH3P31942 346 aaKnown RBP16.59■□□□□ 0.25
UPF1-206ENST00000598471 SOX5P35711 763 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 TNNC1P63316 161 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 PPIGQ13427 754 aaKnown RBP eCLIP16.59■□□□□ 0.252e-7■■□□□ 11.8
UPF1-206ENST00000598471 C9orf57Q5W0N0 161 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 SPOPLQ6IQ16 392 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 CYP26C1Q6V0L0 522 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 NPAS4Q8IUM7 802 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 TATDN2Q93075 761 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 XYLT2Q9H1B5 865 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 CXCL16Q9H2A7 254 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 APOBEC3GQ9HC16 384 aaKnown RBP16.59■□□□□ 0.25
UPF1-206ENST00000598471 AIPL1Q9NZN9 384 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 DNAH12Q6ZR08 3092 aa16.59■□□□□ 0.25
UPF1-206ENST00000598471 ANO9A1A5B4 782 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 OFD1O75665 1012 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 SKILP12757 684 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 CSF2RAP15509 400 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 FECHP22830 423 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 RPL9P32969 192 aaKnown RBP16.58■□□□□ 0.24
UPF1-206ENST00000598471 CDK17Q00537 523 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 MEA1Q16626 185 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 SV2CQ496J9 727 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 NOMO2Q5JPE7 1267 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 CXorf38Q8TB03 319 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 DDX27Q96GQ7 796 aaKnown RBP16.58■□□□□ 0.24
UPF1-206ENST00000598471 UROC1Q96N76 676 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 IL23AQ9NPF7 189 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 AJAP1Q9UKB5 411 aaPredicted RBP16.58■□□□□ 0.24
UPF1-206ENST00000598471 NUB1Q9Y5A7 615 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 NR2E3Q9Y5X4 410 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 BZW2Q9Y6E2 419 aaKnown RBP16.58■□□□□ 0.24
UPF1-206ENST00000598471 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.58■□□□□ 0.24
UPF1-206ENST00000598471 PDCD11Q14690 1871 aaKnown RBP16.58■□□□□ 0.24
UPF1-206ENST00000598471 SCN5AQ14524 2016 aa16.58■□□□□ 0.24
UPF1-206ENST00000598471 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.57■□□□□ 0.24
UPF1-206ENST00000598471 ARHGAP6O43182 974 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 BAIAP3O94812 1187 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 POMCP01189 267 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 AMHP03971 560 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 SERPING1P05155 500 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 PAX3P23760 479 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 ITGB8P26012 769 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 USP8P40818 1118 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 TAF6P49848 677 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 CCZ1BP86790 482 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 CCZ1P86791 482 aaPredicted RBP16.57■□□□□ 0.24
UPF1-206ENST00000598471 TUSC3Q13454 348 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 TCTN1Q2MV58 587 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 WDR72Q3MJ13 1102 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 TDRD12Q587J7 1177 aaKnown RBP16.57■□□□□ 0.24
UPF1-206ENST00000598471 TTC39CQ8N584 583 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 GSTCDQ8NEC7 633 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 SHC3Q92529 594 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 KREMEN1Q96MU8 473 aa16.57■□□□□ 0.24
UPF1-206ENST00000598471 ZNF830Q96NB3 372 aaPredicted RBP16.57■□□□□ 0.24
UPF1-206ENST00000598471 MRPL9Q9BYD2 267 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms