RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 SNRPFP62306 86 aaKnown RBP17.51■□□□□ 0.39
TRIM28-213ENST00000598355 DPYDQ12882 1025 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 MRPL58Q14197 206 aaKnown RBP17.51■□□□□ 0.39
TRIM28-213ENST00000598355 TMEM132DQ14C87 1099 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 ARMCX5Q6P1M9 558 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 C12orf56Q8IXR9 622 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 FMR1NBQ8N0W7 255 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-213ENST00000598355 TMEM87AQ8NBN3 555 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 ENGASEQ8NFI3 743 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 BEST2Q8NFU1 509 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 SAAL1Q96ER3 474 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 NOTCH4Q99466 2003 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 MAN1C1Q9NR34 630 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 AGPAT3Q9NRZ7 376 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 FBXW11Q9UKB1 542 aa17.51■□□□□ 0.39
TRIM28-213ENST00000598355 I3L4J1 428 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 PPEF2O14830 753 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 TGM5O43548 720 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 ZNF202O95125 648 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 PRR29P0C7W0 189 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 RPL17P18621 184 aaKnown RBP17.5■□□□□ 0.39
TRIM28-213ENST00000598355 GUCY2FP51841 1108 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 STK4Q13043 487 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 PSMD2Q13200 908 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 KMT5BQ4FZB7 885 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 SLC8B1Q6J4K2 584 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 C15orf39Q6ZRI6 1047 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 ANKS3Q6ZW76 656 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 GPD1LQ8N335 351 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 FEZF2Q8TBJ5 459 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 TMEM174Q8WUU8 243 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 POP1Q99575 1024 aaKnown RBP17.5■□□□□ 0.39
TRIM28-213ENST00000598355 FAM213AQ9BRX8 229 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 PHF7Q9BWX1 381 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-213ENST00000598355 PLEKHA4Q9H4M7 779 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 SLC39A2Q9NP94 309 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 EXOC1Q9NV70 894 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 CGNQ9P2M7 1197 aaKnown RBP17.5■□□□□ 0.39
TRIM28-213ENST00000598355 CDH22Q9UJ99 828 aa17.5■□□□□ 0.39
TRIM28-213ENST00000598355 LOC730098B7Z3J9 87 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 PIRO00625 290 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 ADAM12O43184 909 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 RHOBTB3O94955 611 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 PAX3P23760 479 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 SNW1Q13573 536 aaKnown RBP17.49■□□□□ 0.39
TRIM28-213ENST00000598355 RAB33AQ14088 237 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 VARS2Q5ST30 1063 aaKnown RBP17.49■□□□□ 0.39
TRIM28-213ENST00000598355 C9orf57Q5W0N0 161 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 RSPO2Q6UXX9 243 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-213ENST00000598355 CYP26C1Q6V0L0 522 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 CEP57Q86XR8 500 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 GJD3Q8N144 294 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 CXorf38Q8TB03 319 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 NECTIN4Q96NY8 510 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 RBAKQ9NYW8 714 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-213ENST00000598355 HSPBP1Q9NZL4 362 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 DPP7Q9UHL4 492 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 PCDHB8Q9UN66 801 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 NUB1Q9Y5A7 615 aa17.49■□□□□ 0.39
TRIM28-213ENST00000598355 MYO10Q9HD67 2058 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-213ENST00000598355 RPN1P04843 607 aaKnown RBP17.48■□□□□ 0.39
TRIM28-213ENST00000598355 MCM4P33991 863 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 MTHFRP42898 656 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 KCNB1Q14721 858 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 KNOP1Q1ED39 458 aaKnown RBP17.48■□□□□ 0.39
TRIM28-213ENST00000598355 RARS2Q5T160 578 aaKnown RBP17.48■□□□□ 0.39
TRIM28-213ENST00000598355 CES5AQ6NT32 575 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 GPR149Q86SP6 731 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 C12orf76Q8N812 135 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-213ENST00000598355 FAM212AQ96EL1 285 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 KCTD10Q9H3F6 313 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 PCIF1Q9H4Z3 704 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 POMKQ9H5K3 350 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 ZDHHC7Q9NXF8 308 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 TRIOO75962 3097 aa17.48■□□□□ 0.39
TRIM28-213ENST00000598355 GOLGA8IPA6NC78 632 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 GOLGA8JA6NMD2 632 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 HOXA9P31269 272 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 LILRA4P59901 499 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 FAM160A1Q05DH4 1040 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 KANK3Q6NY19 840 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 ELMSAN1Q6PJG2 1045 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 HS2ST1Q7LGA3 356 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 CBWD2Q8IUF1 395 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 GLYCTKQ8IVS8 523 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 NELFCDQ8IXH7 590 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 KREMEN2Q8NCW0 462 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 ZNF707Q96C28 371 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-213ENST00000598355 RIPOR3Q96MK2 946 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 APOL5Q9BWW9 433 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 KIAA1586Q9HCI6 787 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 CDY1Q9Y6F8 540 aa17.47■□□□□ 0.39
TRIM28-213ENST00000598355 SPTLC1O15269 473 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 OAZ2O95190 189 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 POU2F2P09086 479 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 TYMPP19971 482 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 OR1D2P34982 312 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 ROR1Q01973 937 aa17.46■□□□□ 0.39
TRIM28-213ENST00000598355 TMC5Q6UXY8 1006 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms