RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GUF1Q8N442 669 aaKnown RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 RDH13Q8NBN7 331 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 VN1R2Q8NFZ6 395 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 SPATA20Q8TB22 786 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 LNX1Q8TBB1 728 aaPredicted RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 SLC22A17Q8WUG5 538 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 MSLNLQ96KJ4 702 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 SUSD3Q96L08 255 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 KCTD10Q9H3F6 313 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 CD207Q9UJ71 328 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 BARX2Q9UMQ3 279 aaPredicted RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 ANO9A1A5B4 782 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 PIRO00625 290 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 EXOC3O60645 756 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 BMP1P13497 986 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 KCNQ1P51787 676 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 CLCN4P51793 760 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 TFAMQ00059 246 aaKnown RBP16.26■□□□□ 0.19
UPF1-202ENST00000594243 MYBPC2Q14324 1141 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 PSMD5Q16401 504 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 ZNF658Q5TYW1 1059 aaPredicted RBP16.26■□□□□ 0.19
UPF1-202ENST00000594243 C9orf57Q5W0N0 161 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 PTCRAQ6ISU1 281 aaPredicted RBP16.26■□□□□ 0.19
UPF1-202ENST00000594243 ANKRD54Q6NXT1 300 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 ELMSAN1Q6PJG2 1045 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 PRSS55Q6UWB4 352 aaPredicted RBP16.26■□□□□ 0.19
UPF1-202ENST00000594243 ANKS3Q6ZW76 656 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 CBWD2Q8IUF1 395 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 SLC9A9Q8IVB4 645 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 EFCAB13Q8IY85 973 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 APPL2Q8NEU8 664 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 GBP4Q96PP9 640 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 PDE11AQ9HCR9 933 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 DZANK1Q9NVP4 752 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 MAPK8IP1Q9UQF2 711 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 TRAF3IP3Q9Y228 551 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 TRIP11Q15643 1979 aa16.26■□□□□ 0.19
UPF1-202ENST00000594243 GRXCR2A6NFK2 248 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 H7C4K7 107 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 I3L4J1 428 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 TKTP29401 623 aaKnown RBP16.25■□□□□ 0.19
UPF1-202ENST00000594243 GUCY2FP51841 1108 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 RBM10P98175 930 aaKnown RBP16.25■□□□□ 0.19
UPF1-202ENST00000594243 DSTYKQ6XUX3 929 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 ANKRD36BP1Q96IX9 119 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 FNBP1Q96RU3 617 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 DMAC2Q9NW81 257 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 PCDHB8Q9UN66 801 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 R3HCC1Q9Y3T6 440 aaKnown RBP16.25■□□□□ 0.19
UPF1-202ENST00000594243 BACE2Q9Y5Z0 518 aa16.25■□□□□ 0.19
UPF1-202ENST00000594243 REV3LO60673 3130 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 ARHGEF37A1IGU5 675 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 M0QZQ0 153 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 GLUD1P00367 558 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 TMEM191BP0C7N4 346 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 EPCAMP16422 314 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 AARSP49588 968 aaKnown RBP eCLIP16.24■□□□□ 0.19
UPF1-202ENST00000594243 WNT7BP56706 349 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 LILRA4P59901 499 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 SMAD4Q13485 552 aaKnown RBP16.24■□□□□ 0.19
UPF1-202ENST00000594243 CLUL1Q15846 466 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 NFIL3Q16649 462 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 DUOXA2Q1HG44 320 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 COBLL1Q53SF7 1204 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 PALB2Q86YC2 1186 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 WDR49Q8IV35 697 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 CSGALNACT2Q8N6G5 542 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 HDAC7Q8WUI4 952 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 ERCC4Q92889 916 aaPredicted RBP16.24■□□□□ 0.19
UPF1-202ENST00000594243 MFSD14AQ96MC6 490 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 CLSTN3Q9BQT9 956 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 INTS13Q9NVM9 706 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 MTRRQ9UBK8 725 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 ITGA11Q9UKX5 1188 aa16.24■□□□□ 0.19
UPF1-202ENST00000594243 PDCD11Q14690 1871 aaKnown RBP16.24■□□□□ 0.19
UPF1-202ENST00000594243 TCF20Q9UGU0 1960 aaKnown RBP16.24■□□□□ 0.19
UPF1-202ENST00000594243 NCOR1O75376 2440 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 SPDYE4A6NLX3 237 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 MBTPS2O43462 519 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 TNNC2P02585 160 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 NR3C1P04150 777 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 RPL17P18621 184 aaKnown RBP16.23■□□□□ 0.19
UPF1-202ENST00000594243 TNNI1P19237 187 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 RPL13P26373 211 aaKnown RBP16.23■□□□□ 0.19
UPF1-202ENST00000594243 PPP1R2P41236 205 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 PNPLA4P41247 253 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 TAF6P49848 677 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 ITIH3Q06033 890 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 CYP24A1Q07973 514 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 MRPL58Q14197 206 aaKnown RBP16.23■□□□□ 0.19
UPF1-202ENST00000594243 PSMD6Q15008 389 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 VARS2Q5ST30 1063 aaKnown RBP16.23■□□□□ 0.19
UPF1-202ENST00000594243 CES5AQ6NT32 575 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 GLYCTKQ8IVS8 523 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 TMEM130Q8N3G9 435 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 SMRP1Q8NCR6 262 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 ZNF560Q96MR9 790 aa16.23■□□□□ 0.19
UPF1-202ENST00000594243 OXCT2Q9BYC2 517 aaPredicted RBP16.23■□□□□ 0.19
UPF1-202ENST00000594243 PLEKHA4Q9H4M7 779 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms