RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NOC3LQ8WTT2 800 aaKnown RBP12.89□□□□□ -0.35
LIG3-213ENST00000590630 MSLNLQ96KJ4 702 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 SUSD3Q96L08 255 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 KLHL5Q96PQ7 755 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 GTPBP4Q9BZE4 634 aaKnown RBP12.89□□□□□ -0.35
LIG3-213ENST00000590630 KCTD10Q9H3F6 313 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 CD207Q9UJ71 328 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 BARX2Q9UMQ3 279 aaPredicted RBP12.89□□□□□ -0.35
LIG3-213ENST00000590630 FAM50BQ9Y247 325 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 ANO9A1A5B4 782 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 CLIC2O15247 247 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 BMP1P13497 986 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 IGFBP6P24592 240 aaPredicted RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 MCM4P33991 863 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 BRCC3P46736 316 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 CYP2J2P51589 502 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 CLCN4P51793 760 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 RBM10P98175 930 aaKnown RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 PSMD5Q16401 504 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 C9orf57Q5W0N0 161 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 PTCRAQ6ISU1 281 aaPredicted RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 LLGL2Q6P1M3 1020 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 ELMSAN1Q6PJG2 1045 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 ANKS3Q6ZW76 656 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 CBWD2Q8IUF1 395 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 SLC9A9Q8IVB4 645 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 GUF1Q8N442 669 aaKnown RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 SMRP1Q8NCR6 262 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 LNX1Q8TBB1 728 aaPredicted RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 SLC22A17Q8WUG5 538 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 CACTINQ8WUQ7 758 aaKnown RBP12.88□□□□□ -0.35
LIG3-213ENST00000590630 SMARCE1Q969G3 411 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 PDE11AQ9HCR9 933 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 DZANK1Q9NVP4 752 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 DPP3Q9NY33 737 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 DPP7Q9UHL4 492 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 PCDHA5Q9Y5H7 936 aa12.88□□□□□ -0.35
LIG3-213ENST00000590630 I3L4J1 428 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 M0QZQ0 153 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 PIRO00625 290 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 CALUO43852 315 aaPredicted RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 EXOC3O60645 756 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 PRPF40AO75400 957 aaKnown RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 GLUD1P00367 558 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 TKTP29401 623 aaKnown RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 AARSP49588 968 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIG3-213ENST00000590630 GUCY2FP51841 1108 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 WNT7BP56706 349 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 LILRA4P59901 499 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 TFAMQ00059 246 aaKnown RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 SMAD4Q13485 552 aaKnown RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 MYBPC2Q14324 1141 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 COBLL1Q53SF7 1204 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 ZNF658Q5TYW1 1059 aaPredicted RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 ANKRD54Q6NXT1 300 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 PRSS55Q6UWB4 352 aaPredicted RBP12.87□□□□□ -0.35
LIG3-213ENST00000590630 APPL2Q8NEU8 664 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 DMAC2Q9NW81 257 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 MTRRQ9UBK8 725 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 PCDHB8Q9UN66 801 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 TRAF3IP3Q9Y228 551 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 BACE2Q9Y5Z0 518 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 TSC2P49815 1807 aa12.87□□□□□ -0.35
LIG3-213ENST00000590630 ARHGEF37A1IGU5 675 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 GRXCR2A6NFK2 248 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 NR3C1P04150 777 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 TMEM191BP0C7N4 346 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 EPCAMP16422 314 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 RPL17P18621 184 aaKnown RBP12.86□□□□□ -0.35
LIG3-213ENST00000590630 PNPLA4P41247 253 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 CYP24A1Q07973 514 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 PSMD6Q15008 389 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 CLUL1Q15846 466 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 NFIL3Q16649 462 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 VARS2Q5ST30 1063 aaKnown RBP12.86□□□□□ -0.35
LIG3-213ENST00000590630 WDR49Q8IV35 697 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 TMEM130Q8N3G9 435 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 RDH13Q8NBN7 331 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 HDAC7Q8WUI4 952 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 ZNF560Q96MR9 790 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 GBP4Q96PP9 640 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 FNBP1Q96RU3 617 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 CLSTN3Q9BQT9 956 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 ITGA11Q9UKX5 1188 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 MAPK8IP1Q9UQF2 711 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 C2orf16Q68DN1 1984 aa12.86□□□□□ -0.35
LIG3-213ENST00000590630 H7C4K7 107 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 TULP1O00294 542 aaPredicted RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 PPEF2O14830 753 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 MBTPS2O43462 519 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 TGM5O43548 720 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 TNNC2P02585 160 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 RPL13P26373 211 aaKnown RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 TAF6P49848 677 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 ITIH3Q06033 890 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 MRPL58Q14197 206 aaKnown RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 SMAD2Q15796 467 aaKnown RBP12.85□□□□□ -0.35
LIG3-213ENST00000590630 DUOXA2Q1HG44 320 aa12.85□□□□□ -0.35
LIG3-213ENST00000590630 SV2CQ496J9 727 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms