RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 TUBGCP5Q96RT8 1024 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 TESK2Q96S53 571 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 UBXN6Q9BZV1 441 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 RNF38Q9H0F5 515 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 POFUT1Q9H488 388 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 SMC3Q9UQE7 1217 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 SLC5A6Q9Y289 635 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 ASB1Q9Y576 335 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 CENPFP49454 3210 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 UNC80Q8N2C7 3258 aa6.51□□□□□ -1.37
SMAD4-208ENST00000589706 ELP1O95163 1332 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PTPRCP08575 1304 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 CCDC171Q6TFL3 1326 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 MRC1P22897 1456 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 A0A087WUV0 522 aaPredicted RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 A0A1W2PPC1 479 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 ANO9A1A5B4 782 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PRAMEF22A3QJZ6 481 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PES1O00541 588 aaKnown RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PSPNO60542 156 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 NDUFS2O75306 463 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PPFIA2O75334 1257 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 EFEMP2O95967 443 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 LPLP06858 475 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 H2AFXP16104 143 aaPredicted RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PRPHP41219 470 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 FKBP1BP68106 108 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 KCNMA1Q12791 1236 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 GALEQ14376 348 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 SLC4A8Q2Y0W8 1093 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 PAN2Q504Q3 1202 aaKnown RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 ATAT1Q5SQI0 421 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 ZBTB41Q5SVQ8 909 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 CCDC186Q7Z3E2 898 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 RTN4RL1Q86UN2 441 aaPredicted RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 CILP2Q8IUL8 1156 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 TEX11Q8IYF3 940 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 ARRDC4Q8NCT1 418 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 HIPK4Q8NE63 616 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 TTLL11Q8NHH1 800 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 DNAAF4Q8WXU2 420 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 DPF2Q92785 391 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 HPS3Q969F9 1004 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 FERMT2Q96AC1 680 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 MIEF2Q96C03 454 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 MAML3Q96JK9 1138 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 ZNF333Q96JL9 665 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 MYL10Q9BUA6 226 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 WNT8AQ9H1J5 351 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 RWDD1Q9H446 243 aaPredicted RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 GNL3LQ9NVN8 582 aaKnown RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 TUBD1Q9UJT1 453 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 NUDT5Q9UKK9 219 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 NIP7Q9Y221 180 aaKnown RBP eCLIP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.5□□□□□ -1.37
SMAD4-208ENST00000589706 RPS6KL1Q9Y6S9 549 aa6.5□□□□□ -1.37
SMAD4-208ENST00000589706 UBE2Q2LH0YL09 131 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 APAF1O14727 1248 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 DYRK3O43781 588 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 PRPF6O94906 941 aaKnown RBP6.49□□□□□ -1.37
SMAD4-208ENST00000589706 APOL3O95236 402 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 IGHDP01880 384 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 FAHP16930 419 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 SLC5A3P53794 718 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 SREBF2Q12772 1141 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 NEDD9Q14511 834 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 RBBP5Q15291 538 aaKnown RBP6.49□□□□□ -1.37
SMAD4-208ENST00000589706 C1QTNF12Q5T7M4 302 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 MCTP1Q6DN14 999 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 LILRA6Q6PI73 481 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 ZNF574Q6ZN55 896 aaPredicted RBP6.49□□□□□ -1.37
SMAD4-208ENST00000589706 MOB2Q70IA6 237 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 Q7L0L9 218 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 CHST15Q7LFX5 561 aaPredicted RBP6.49□□□□□ -1.37
SMAD4-208ENST00000589706 CATIPQ7Z7H3 387 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 WFDC3Q8IUB2 231 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 TTC5Q8N0Z6 440 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 SUPT20HQ8NEM7 779 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 GPT2Q8TD30 523 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 AUTS2Q8WXX7 1259 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 RPGRQ92834 1020 aaKnown RBP6.49□□□□□ -1.37
SMAD4-208ENST00000589706 DDX11Q96FC9 970 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 PEX11GQ96HA9 241 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 CRAMP1Q96RY5 1269 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 ZSCAN16Q9H4T2 348 aaPredicted RBP6.49□□□□□ -1.37
SMAD4-208ENST00000589706 RXFP1Q9HBX9 757 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 RAPGEFL1Q9UHV5 662 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 DNM3Q9UQ16 869 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 FAM50BQ9Y247 325 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 BRCA2P51587 3418 aa6.49□□□□□ -1.37
SMAD4-208ENST00000589706 YDJCA8MPS7 323 aa6.48□□□□□ -1.37
SMAD4-208ENST00000589706 EIF3CLB5ME19 914 aaKnown RBP6.48□□□□□ -1.37
SMAD4-208ENST00000589706 SRGAP3O43295 1099 aa6.48□□□□□ -1.37
SMAD4-208ENST00000589706 NEMFO60524 1076 aa6.48□□□□□ -1.37
SMAD4-208ENST00000589706 KINO60870 393 aaKnown RBP6.48□□□□□ -1.37
SMAD4-208ENST00000589706 SLU7O95391 586 aaKnown RBP6.48□□□□□ -1.37
SMAD4-208ENST00000589706 HPXP02790 462 aa6.48□□□□□ -1.37
SMAD4-208ENST00000589706 DBHP09172 617 aa6.48□□□□□ -1.37
SMAD4-208ENST00000589706 TNNT1P13805 278 aa6.48□□□□□ -1.37
SMAD4-208ENST00000589706 PNLIPP16233 465 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms