RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TARSP26639 723 aaKnown RBP12.97□□□□□ -0.33
LIG3-209ENST00000586435 STRN3Q13033 797 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 IL17AQ16552 155 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 CTXN3Q4LDR2 81 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 TANGO2Q6ICL3 276 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 ZPBP2Q6X784 338 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 ZNF852Q6ZMS4 543 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 DTHD1Q6ZMT9 781 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 PDZD4Q76G19 769 aaPredicted RBP12.97□□□□□ -0.33
LIG3-209ENST00000586435 LEMD2Q8NC56 503 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 ZBTB44Q8NCP5 570 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 TMEM161BQ8NDZ6 487 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 APPL2Q8NEU8 664 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 NELL1Q92832 810 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 KIF2CQ99661 725 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 PLA2G2FQ9BZM2 168 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 CYP4F11Q9HBI6 524 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 TRPV5Q9NQA5 729 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 KCND2Q9NZV8 630 aa12.97□□□□□ -0.33
LIG3-209ENST00000586435 AFF4Q9UHB7 1163 aaKnown RBP12.97□□□□□ -0.33
LIG3-209ENST00000586435 MRPS17Q9Y2R5 130 aaKnown RBP12.97□□□□□ -0.33
LIG3-209ENST00000586435 NUP210Q8TEM1 1887 aaPredicted RBP12.97□□□□□ -0.33
LIG3-209ENST00000586435 ANK1P16157 1881 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 DMXL1Q9Y485 3027 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 SHISA7A6NL88 538 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 LILRB5O75023 590 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 MAPTP10636 758 aaKnown RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 PLS3P13797 630 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 CD72P21854 359 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 CDC25AP30304 524 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 MCM4P33991 863 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 SMTNP53814 917 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 EPHA5P54756 1037 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 ATP2C1P98194 919 aaPredicted RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 MCL1Q07820 350 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 SLC10A6Q3KNW5 377 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 RILPL1Q5EBL4 403 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 KIAA2013Q8IYS2 634 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 ELMOD1Q8N336 334 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 SYT2Q8N9I0 419 aaPredicted RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 BEST2Q8NFU1 509 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 DDX12PQ92771 950 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 C18orf25Q96B23 403 aaPredicted RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 RMDN1Q96DB5 314 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 ZBTB45Q96K62 511 aaPredicted RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 TBC1D32Q96NH3 1257 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 ASB16Q96NS5 453 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 HINFPQ9BQA5 517 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 CORO1BQ9BR76 489 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 IER2Q9BTL4 223 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 OXCT2Q9BYC2 517 aaPredicted RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 PLEKHA5Q9HAU0 1116 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 ZFP14Q9HCL3 533 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 PRMT8Q9NR22 394 aaPredicted RBP12.96□□□□□ -0.33
LIG3-209ENST00000586435 HEBP1Q9NRV9 189 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 ANKFY1Q9P2R3 1169 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 PCDHB8Q9UN66 801 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 KIF3AQ9Y496 699 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 TSC2P49815 1807 aa12.96□□□□□ -0.33
LIG3-209ENST00000586435 H0YCG3 227 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 M0QZQ0 153 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 MAN2B1O00754 1011 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 HARSP12081 509 aaKnown RBP12.95□□□□□ -0.34
LIG3-209ENST00000586435 LRPAP1P30533 357 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 CCR2P41597 374 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 AARSP49588 968 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIG3-209ENST00000586435 ARPP19P56211 112 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 ADCY1Q08828 1119 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 FZD5Q13467 585 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 FAM78AQ5JUQ0 283 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 CYP4A22Q5TCH4 519 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 IQCEQ6IPM2 695 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 MAMSTRQ6ZN01 415 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 ZNF687Q8N1G0 1237 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 DEPDC1BQ8WUY9 529 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 SMARCD2Q92925 531 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 IRF7Q92985 503 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 TCEAL4Q96EI5 215 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 PNMA5Q96PV4 448 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 FAM126AQ9BYI3 521 aaPredicted RBP12.95□□□□□ -0.34
LIG3-209ENST00000586435 EPC1Q9H2F5 836 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 TRPV4Q9HBA0 871 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 ZSCAN32Q9NX65 697 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 TUBGCP4Q9UGJ1 667 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 DNAH14Q0VDD8 3507 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 WDR87Q6ZQQ6 2873 aa12.95□□□□□ -0.34
LIG3-209ENST00000586435 TTC26A0AVF1 554 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 SFI1A8K8P3 1242 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 CLDN3O15551 220 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 SLC26A4O43511 780 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 MOSPD3O75425 235 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 OAZ2O95190 189 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 CLTAP09496 248 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 CXCL8P10145 99 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 PSMC3P17980 439 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 CYP3A5P20815 502 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 SCP2P22307 547 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 SLC12A3P55017 1021 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 NCKAP1LP55160 1127 aa12.94□□□□□ -0.34
LIG3-209ENST00000586435 YWHAHQ04917 246 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms