RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LONRF2Q1L5Z9 754 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 EFCAB13Q8IY85 973 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 RASGEF1CQ8N431 466 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 UBL4BQ8N7F7 174 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 KAT2BQ92831 832 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 MS4A14Q96JA4 679 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.17■□□□□ 0.02
LIG3-205ENST00000585941 FAM124BQ9H5Z6 455 aaPredicted RBP15.17■□□□□ 0.02
LIG3-205ENST00000585941 CCDC188H7C350 402 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 ALDH1A1P00352 501 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 GNAT1P11488 350 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 AKR1A1P14550 325 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 NSFP46459 744 aaKnown RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 DNA2P51530 1060 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 CCL14Q16627 93 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 C8orf74Q6P047 294 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 CEP120Q8N960 986 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 ZNF564Q8TBZ8 553 aaPredicted RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 ACAP3Q96P50 834 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 NUP85Q9BW27 656 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 ADAMTS10Q9H324 1103 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 GOLPH3Q9H4A6 298 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 RBM12Q9NTZ6 932 aaKnown RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 C2CD2Q9Y426 696 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 ALG6Q9Y672 507 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 LACTBL1A8MY62 500 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 LSM8O95777 96 aaKnown RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 CYP2C9P11712 490 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 P4HA1P13674 534 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 AXLP30530 894 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 GRM5P41594 1212 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 FCGRTP55899 365 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 PPP2R5EQ16537 467 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 BEND6Q5SZJ8 279 aaPredicted RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 LIN9Q5TKA1 542 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 CDR2LQ86X02 465 aaPredicted RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 MCOLN2Q8IZK6 566 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 ELMO3Q96BJ8 720 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 CPB2Q96IY4 423 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 XYLT2Q9H1B5 865 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 WNT8AQ9H1J5 351 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 VRTNQ9H8Y1 702 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 PLEKHA5Q9HAU0 1116 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 FAM53CQ9NYF3 392 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 CNOT8Q9UFF9 292 aaKnown RBP15.16■□□□□ 0.02
LIG3-205ENST00000585941 TMEM59LQ9UK28 342 aa15.16■□□□□ 0.02
LIG3-205ENST00000585941 MROH7Q68CQ1 1323 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 DDX3YO15523 660 aaKnown RBP15.15■□□□□ 0.02
LIG3-205ENST00000585941 THAP12O43422 761 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 DUSP11O75319 330 aaKnown RBP15.15■□□□□ 0.02
LIG3-205ENST00000585941 ADAM17P78536 824 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 FSCN1Q16658 493 aaKnown RBP15.15■□□□□ 0.02
LIG3-205ENST00000585941 ZNF667Q5HYK9 610 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 HDXQ7Z353 690 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 PHF13Q86YI8 300 aaPredicted RBP15.15■□□□□ 0.02
LIG3-205ENST00000585941 NME8Q8N427 588 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 TTC39CQ8N584 583 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 PPP1R16BQ96T49 567 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 LRRC1Q9BTT6 524 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 ZNF518BQ9C0D4 1074 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 CISHQ9NSE2 258 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 EHD2Q9NZN4 543 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 STIM2Q9P246 746 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 ITGA11Q9UKX5 1188 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 ABT1Q9ULW3 272 aaKnown RBP15.15■□□□□ 0.02
LIG3-205ENST00000585941 DERAQ9Y315 318 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 UMODL1Q5DID0 1318 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 RALGAPA2Q2PPJ7 1873 aa15.15■□□□□ 0.02
LIG3-205ENST00000585941 GPR32O75388 356 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 CSDE1O75534 798 aaKnown RBP15.14■□□□□ 0.01
LIG3-205ENST00000585941 TBC1D8O95759 1140 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 MYL3P08590 195 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 TNFRSF8P28908 595 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 NOMO3P69849 1222 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 C1QBPQ07021 282 aaKnown RBP15.14■□□□□ 0.01
LIG3-205ENST00000585941 TMEM132DQ14C87 1099 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 KIZQ2M2Z5 673 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 SLC10A6Q3KNW5 377 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 NAA35Q5VZE5 725 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 MFSD14CQ5VZR4 134 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 JADE1Q6IE81 842 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 SLC27A1Q6PCB7 646 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 CATSPER4Q7RTX7 472 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 TMEM192Q8IY95 271 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 KRT222Q8N1A0 295 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 FUT8Q9BYC5 575 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 FAM49AQ9H0Q0 323 aaPredicted RBP15.14■□□□□ 0.01
LIG3-205ENST00000585941 CYP3A43Q9HB55 503 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 MRPL47Q9HD33 250 aaKnown RBP15.14■□□□□ 0.01
LIG3-205ENST00000585941 RNF216Q9NWF9 866 aaPredicted RBP15.14■□□□□ 0.01
LIG3-205ENST00000585941 SMARCAL1Q9NZC9 954 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 LCMT1Q9UIC8 334 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 L1RE1Q9UN81 338 aa15.14■□□□□ 0.01
LIG3-205ENST00000585941 CCDC66A2RUB6 948 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 SEC31AO94979 1220 aaKnown RBP15.13■□□□□ 0.01
LIG3-205ENST00000585941 STAU1O95793 577 aaKnown RBP15.13■□□□□ 0.01
LIG3-205ENST00000585941 NFICP08651 508 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 KRT19P08727 400 aa15.13■□□□□ 0.01
LIG3-205ENST00000585941 DARSP14868 501 aaKnown RBP15.13■□□□□ 0.01
LIG3-205ENST00000585941 HSPA6P17066 643 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms