RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 DDX1Q92499 740 aaKnown RBP10.9□□□□□ -0.66
RFFL-208ENST00000581039 E2F7Q96AV8 911 aa10.9□□□□□ -0.66
RFFL-208ENST00000581039 GPR88Q9GZN0 384 aa10.9□□□□□ -0.66
RFFL-208ENST00000581039 FBXL5Q9UKA1 691 aa10.9□□□□□ -0.66
RFFL-208ENST00000581039 MAFFQ9ULX9 164 aa10.9□□□□□ -0.66
RFFL-208ENST00000581039 NUB1Q9Y5A7 615 aa10.9□□□□□ -0.66
RFFL-208ENST00000581039 CHD8Q9HCK8 2581 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 NRG2O14511 850 aaPredicted RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 FDPSP14324 419 aaKnown RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 KCNA4P22459 653 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 RPA1P27694 616 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 RPL9P32969 192 aaKnown RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 GRM5P41594 1212 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 KPNA1P52294 538 aaPredicted RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 OSTNP61366 133 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 SOX4Q06945 474 aaPredicted RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 TWF1Q12792 350 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 TRIM29Q14134 588 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 MRPL58Q14197 206 aaKnown RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 LRRC32Q14392 662 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 ALKAL1Q6UXT8 129 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 LONP2Q86WA8 852 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 HS6ST3Q8IZP7 471 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 KIFAP3Q92845 792 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 MSANTD3Q96H12 275 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 KIFC3Q9BVG8 833 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 TMEM60Q9H2L4 133 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 SLITRK6Q9H5Y7 841 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 TRPV4Q9HBA0 871 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 POLD4Q9HCU8 107 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 ASAH2Q9NR71 780 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 CEP72Q9P209 647 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 AFF4Q9UHB7 1163 aaKnown RBP10.89□□□□□ -0.67
RFFL-208ENST00000581039 TNFSF13BQ9Y275 285 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 VWA8A3KMH1 1905 aa10.89□□□□□ -0.67
RFFL-208ENST00000581039 HEPACAM2A8MVW5 462 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 WNT7AO00755 349 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 GDF9O60383 454 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 MOSPD3O75425 235 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 GJA1P17302 382 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 MARCKSP29966 332 aaPredicted RBP10.88□□□□□ -0.67
RFFL-208ENST00000581039 MCM7P33993 719 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 MAP1BP46821 2468 aaKnown RBP10.88□□□□□ -0.67
RFFL-208ENST00000581039 DMWDQ09019 674 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 SRSF5Q13243 272 aaKnown RBP10.88□□□□□ -0.67
RFFL-208ENST00000581039 PTGDRQ13258 359 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 GAS6Q14393 721 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 ANKRD1Q15327 319 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 TEAD2Q15562 447 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 XKR4Q5GH76 650 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 DGKKQ5KSL6 1271 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 HEATR6Q6AI08 1181 aaKnown RBP10.88□□□□□ -0.67
RFFL-208ENST00000581039 IL31Q6EBC2 164 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 ZNF280DQ6N043 979 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 CEP68Q76N32 757 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 DIS3L2Q8IYB7 885 aaKnown RBP10.88□□□□□ -0.67
RFFL-208ENST00000581039 APPL2Q8NEU8 664 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 FAM200AQ8TCP9 573 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 ACAP3Q96P50 834 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 TCHPQ9BT92 498 aa10.88□□□□□ -0.67
RFFL-208ENST00000581039 C8orf33Q9H7E9 229 aaPredicted RBP10.88□□□□□ -0.67
RFFL-208ENST00000581039 CACNA1GO43497 2377 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 SLC38A8A6NNN8 435 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 CCDC169A6NNP5 214 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 CHADO15335 359 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 PAPSS2O95340 614 aaPredicted RBP10.87□□□□□ -0.67
RFFL-208ENST00000581039 CPB1P15086 417 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 KCNE1P15382 129 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 MCM4P33991 863 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 EPHA5P54756 1037 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 ZNF568Q3ZCX4 644 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 CEP120Q8N960 986 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 DDX12PQ92771 950 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 ZMAT2Q96NC0 199 aaKnown RBP10.87□□□□□ -0.67
RFFL-208ENST00000581039 ACO2Q99798 780 aaKnown RBP10.87□□□□□ -0.67
RFFL-208ENST00000581039 CDT1Q9H211 546 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 BHMT2Q9H2M3 363 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 PTPRHQ9HD43 1115 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 RBM12Q9NTZ6 932 aaKnown RBP10.87□□□□□ -0.67
RFFL-208ENST00000581039 ANGPTL2Q9UKU9 493 aa10.87□□□□□ -0.67
RFFL-208ENST00000581039 K7ESF4 209 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 ARNTLO00327 626 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 DPYSL4O14531 572 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 MCF2P10911 925 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 MUTP22033 750 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 SOX9P48436 509 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 FOSBP53539 338 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 EPHB3P54753 998 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 PLD1Q13393 1074 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 AASDHQ4L235 1098 aaPredicted RBP10.86□□□□□ -0.67
RFFL-208ENST00000581039 HAUS3Q68CZ6 603 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 RNF19BQ6ZMZ0 732 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 HAUS6Q7Z4H7 955 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 RALGPS2Q86X27 583 aaPredicted RBP10.86□□□□□ -0.67
RFFL-208ENST00000581039 FAM160A2Q8N612 972 aaPredicted RBP10.86□□□□□ -0.67
RFFL-208ENST00000581039 NECAB1Q8N987 351 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 SHKBP1Q8TBC3 707 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 C18orf25Q96B23 403 aaPredicted RBP10.86□□□□□ -0.67
RFFL-208ENST00000581039 SUSD3Q96L08 255 aa10.86□□□□□ -0.67
RFFL-208ENST00000581039 TBC1D32Q96NH3 1257 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms