RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NLRC4Q9NPP4 1024 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 PRKAG2Q9UGJ0 569 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 TANC1Q9C0D5 1861 aa16.42■□□□□ 0.22
SS18-215ENST00000580642 SSU72P8A0A1W2PR75 194 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 LRRC53A6NM62 1247 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 PIRO00625 290 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 PTGESO14684 152 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 GFPT2O94808 682 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 BAIAP3O94812 1187 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 SERPING1P05155 500 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 SKILP12757 684 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 MLH1P40692 756 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 BPIFB4P59827 614 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 MYL6P60660 151 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 DRAP1Q14919 205 aaPredicted RBP16.41■□□□□ 0.22
SS18-215ENST00000580642 ZNF699Q32M78 642 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 ZNF667Q5HYK9 610 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 NPAS4Q8IUM7 802 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 URGCPQ8TCY9 931 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 SCLYQ96I15 445 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 GAD1Q99259 594 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 AGAP1Q9UPQ3 857 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 CNTN6Q9UQ52 1028 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 PCDHB7Q9Y5E2 793 aa16.41■□□□□ 0.22
SS18-215ENST00000580642 CARNS1A5YM72 827 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 TRIM43BA6NCK2 446 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 TULP1O00294 542 aaPredicted RBP16.4■□□□□ 0.22
SS18-215ENST00000580642 OFD1O75665 1012 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 KRT19P08727 400 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 POLR2BP30876 1174 aaKnown RBP16.4■□□□□ 0.22
SS18-215ENST00000580642 CCZ1BP86790 482 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 CCZ1P86791 482 aaPredicted RBP16.4■□□□□ 0.22
SS18-215ENST00000580642 RAPGEF1Q13905 1077 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 ASIC2Q16515 512 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 C9orf57Q5W0N0 161 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 TMEM139Q8IV31 216 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 ARHGEF19Q8IW93 802 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 FAM71AQ8IYT1 594 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 CRIPAKQ8N1N5 446 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 TRIM43Q96BQ3 446 aaPredicted RBP16.4■□□□□ 0.22
SS18-215ENST00000580642 HPDLQ96IR7 371 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 KREMEN1Q96MU8 473 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 KLK14Q9P0G3 267 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 CITO14578 2027 aa16.4■□□□□ 0.22
SS18-215ENST00000580642 ARHGEF37A1IGU5 675 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 LRMPQ12912 555 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 MAPK8IP2Q13387 824 aaPredicted RBP16.39■□□□□ 0.21
SS18-215ENST00000580642 PPIGQ13427 754 aaKnown RBP eCLIP16.39■□□□□ 0.21
SS18-215ENST00000580642 NAB2Q15742 525 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 SV2CQ496J9 727 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 WDR59Q6PJI9 974 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 DPH6Q7L8W6 267 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 IRF2BP2Q7Z5L9 587 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 TATDN2Q93075 761 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 ZFP42Q96MM3 310 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 MRPL9Q9BYD2 267 aaKnown RBP16.39■□□□□ 0.21
SS18-215ENST00000580642 BCO2Q9BYV7 579 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 GPR88Q9GZN0 384 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 DNAI2Q9GZS0 605 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 KCNF1Q9H3M0 494 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 APOBEC3GQ9HC16 384 aaKnown RBP16.39■□□□□ 0.21
SS18-215ENST00000580642 PRDM5Q9NQX1 630 aaPredicted RBP16.39■□□□□ 0.21
SS18-215ENST00000580642 GDAP2Q9NXN4 497 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 LRFN2Q9ULH4 789 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 ZKSCAN5Q9Y2L8 839 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 NUB1Q9Y5A7 615 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 BRCA2P51587 3418 aa16.39■□□□□ 0.21
SS18-215ENST00000580642 ANK1P16157 1881 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 TAF6P49848 677 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 APBA1Q02410 837 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 TUSC3Q13454 348 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 NOMO2Q5JPE7 1267 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 GJB7Q6PEY0 223 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 VPS36Q86VN1 386 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 ABI1Q8IZP0 508 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 SPATA18Q8TC71 538 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 LPPQ93052 612 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 C18orf25Q96B23 403 aaPredicted RBP16.38■□□□□ 0.21
SS18-215ENST00000580642 PI4K2AQ9BTU6 479 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 IL23AQ9NPF7 189 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 KCND1Q9NSA2 647 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 TUBGCP4Q9UGJ1 667 aa16.38■□□□□ 0.21
SS18-215ENST00000580642 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.38■□□□□ 0.21
SS18-215ENST00000580642 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.37■□□□□ 0.21
SS18-215ENST00000580642 FOXN3O00409 490 aaPredicted RBP16.37■□□□□ 0.21
SS18-215ENST00000580642 CCP110O43303 1012 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 CYLC1P35663 651 aaPredicted RBP16.37■□□□□ 0.21
SS18-215ENST00000580642 ASPAP45381 313 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 SCNN1GP51170 649 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 TNNC1P63316 161 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 KLHL30Q0D2K2 578 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 ARHGAP44Q17R89 818 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 WDR72Q3MJ13 1102 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 GLRA4Q5JXX5 417 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 HGSNATQ68CP4 663 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 DEFB128Q7Z7B8 93 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 ZNF677Q86XU0 584 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 UBR7Q8N806 425 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 RNF169Q8NCN4 708 aa16.37■□□□□ 0.21
SS18-215ENST00000580642 CCDC42Q96M95 316 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms