RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 KANSL3Q9P2N6 904 aa17.37■□□□□ 0.37
SS18-211ENST00000578954 AJAP1Q9UKB5 411 aaPredicted RBP17.37■□□□□ 0.37
SS18-211ENST00000578954 COL4A6Q14031 1691 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 AKR1B15C9JRZ8 316 aaPredicted RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 TULP1O00294 542 aaPredicted RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 FGFR1P11362 822 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 JAM2P57087 298 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 POLR2FP61218 127 aaKnown RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 WDR5P61964 334 aaKnown RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 DSC1Q08554 894 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 PSRC1Q6PGN9 363 aaPredicted RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 ENOSF1Q7L5Y1 443 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 CCDC186Q7Z3E2 898 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 TMEM130Q8N3G9 435 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 CCDC150Q8NCX0 1101 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 URGCPQ8TCY9 931 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 JAKMIP2Q96AA8 810 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 CASD1Q96PB1 797 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 DNAJC7Q99615 494 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 DNAJC12Q9UKB3 198 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 LRFN2Q9ULH4 789 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 AGAP1Q9UPQ3 857 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 LUC7L2Q9Y383 392 aaKnown RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 NUB1Q9Y5A7 615 aa17.36■□□□□ 0.37
SS18-211ENST00000578954 TDRD15B5MCY1 1934 aaKnown RBP17.36■□□□□ 0.37
SS18-211ENST00000578954 AMHP03971 560 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 ACRP10323 421 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 FECHP22830 423 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 TBXAS1P24557 533 aaPredicted RBP17.35■□□□□ 0.37
SS18-211ENST00000578954 HNRNPH3P31942 346 aaKnown RBP17.35■□□□□ 0.37
SS18-211ENST00000578954 RPL9P32969 192 aaKnown RBP17.35■□□□□ 0.37
SS18-211ENST00000578954 KRT9P35527 623 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 PNPLA4P41247 253 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 TUSC3Q13454 348 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 ZNF699Q32M78 642 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 SPOPLQ6IQ16 392 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 PDXDC1Q6P996 788 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 GJB7Q6PEY0 223 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 TATDN2Q93075 761 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 TOP1MTQ969P6 601 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 ZNF560Q96MR9 790 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 KREMEN1Q96MU8 473 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 UROC1Q96N76 676 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 STK33Q9BYT3 514 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 GPR88Q9GZN0 384 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 NIF3L1Q9GZT8 377 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 NUCKS1Q9H1E3 243 aaKnown RBP17.35■□□□□ 0.37
SS18-211ENST00000578954 RC3H2Q9HBD1 1191 aaKnown RBP17.35■□□□□ 0.37
SS18-211ENST00000578954 GOLGA2P5Q9HBQ8 144 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 UBE2TQ9NPD8 197 aaPredicted RBP17.35■□□□□ 0.37
SS18-211ENST00000578954 SCN1AP35498 2009 aa17.35■□□□□ 0.37
SS18-211ENST00000578954 PPEF2O14830 753 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 POMCP01189 267 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 FGBP02675 491 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 KRT19P08727 400 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 EPHB4P54760 987 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 LRMPQ12912 555 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 FNDC1Q4ZHG4 1894 aaPredicted RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 TMEM240Q5SV17 173 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 CACNA2D4Q7Z3S7 1137 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 PPM1KQ8N3J5 372 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 UBR7Q8N806 425 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 ZNF397Q8NF99 534 aaPredicted RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 CPLX3Q8WVH0 158 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 SHC3Q92529 594 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 SYN2Q92777 582 aaPredicted RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 DDX27Q96GQ7 796 aaKnown RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 HPDLQ96IR7 371 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 PANX2Q96RD6 677 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 MRPL9Q9BYD2 267 aaKnown RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 BCO2Q9BYV7 579 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 FAM124BQ9H5Z6 455 aaPredicted RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 NLRC4Q9NPP4 1024 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 ABHD10Q9NUJ1 306 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 TBC1D13Q9NVG8 400 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 ZMYND8Q9ULU4 1186 aaPredicted RBP17.34■□□□□ 0.37
SS18-211ENST00000578954 INPP5FQ9Y2H2 1132 aa17.34■□□□□ 0.37
SS18-211ENST00000578954 F8VZ95 297 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 DGKIO75912 1065 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 SYN1P17600 705 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 IBSPP21815 317 aaPredicted RBP17.33■□□□□ 0.36
SS18-211ENST00000578954 PAX3P23760 479 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 ASPAP45381 313 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 AARSP49588 968 aaKnown RBP eCLIP17.33■□□□□ 0.36
SS18-211ENST00000578954 MFAP3P55082 362 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 ADKP55263 362 aaKnown RBP17.33■□□□□ 0.36
SS18-211ENST00000578954 DEFB103AP81534 67 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 MYO1EQ12965 1108 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 CUL2Q13617 745 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 MEA1Q16626 185 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 UPP1Q16831 310 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 ZNF667Q5HYK9 610 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 ZNF365Q70YC5 407 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 RRAGAQ7L523 313 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 COLGALT2Q8IYK4 626 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 ABI1Q8IZP0 508 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 OR8K1Q8NGG5 319 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 HERVK_113Q902F9 699 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 KAT5Q92993 513 aa17.33■□□□□ 0.36
SS18-211ENST00000578954 ZNF689Q96CS4 500 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms