RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PPME1Q9Y570 386 aa11.04□□□□□ -0.64
SS18-210ENST00000578700 C2orf16Q68DN1 1984 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 A0A087WZ62 844 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 C2CD2LO14523 706 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 SLC16A3O15427 465 aaKnown RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 ZNF862O60290 1169 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 PRPF6O94906 941 aaKnown RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 NR2F2P24468 414 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 GBP2P32456 591 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 CLCN1P35523 988 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 RFC5P40937 340 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 PHKA2P46019 1235 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 POLGP54098 1239 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 SNRPFP62306 86 aaKnown RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 DMP1Q13316 513 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 DRP2Q13474 957 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 HSP90AA2PQ14568 343 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 MTERF2Q49AM1 385 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 VWA3BQ502W6 1294 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 ZCWPW2Q504Y3 356 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 NOMO2Q5JPE7 1267 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 GLB1LQ6UWU2 654 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 ANO5Q75V66 913 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 MAEAQ7L5Y9 396 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 APTXQ7Z2E3 356 aaKnown RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 ZNF720Q7Z2F6 126 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 GPR149Q86SP6 731 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 IRF2BP1Q8IU81 584 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 CCDC105Q8IYK2 499 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 KIAA2013Q8IYS2 634 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 LINC01465Q8N7H1 131 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 ZNF397Q8NF99 534 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 BCL7CQ8WUZ0 217 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 SLC7A3Q8WY07 619 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 HVCN1Q96D96 273 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 KLHL5Q96PQ7 755 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 FAM193BQ96PV7 902 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 ACCSQ96QU6 501 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 SH2D3AQ9BRG2 576 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 FDXACB1Q9BRP7 624 aaPredicted RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 EMILIN2Q9BXX0 1053 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 KCNF1Q9H3M0 494 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 SFXN1Q9H9B4 322 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 TBC1D13Q9NVG8 400 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 DNAJB4Q9UDY4 337 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 CA14Q9ULX7 337 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 PIN4Q9Y237 131 aaKnown RBP11.03□□□□□ -0.64
SS18-210ENST00000578700 R4GN57 208 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 CEP250Q9BV73 2442 aa11.03□□□□□ -0.64
SS18-210ENST00000578700 MEIS3P2A8K0S8 358 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 TEX33O43247 280 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 OFD1O75665 1012 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 LMNAP02545 664 aaKnown RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 EPB41P11171 864 aaKnown RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 NMT1P30419 496 aaKnown RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 SLC11A1P49279 550 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 LRMPQ12912 555 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 TBX2Q13207 712 aaPredicted RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 DNTTIP2Q5QJE6 756 aaKnown RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 PLA2G4FQ68DD2 849 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 DGLUCYQ7Z3D6 616 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 ZNF280BQ86YH2 543 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 ZNF710Q8N1W2 664 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 GLIS3Q8NEA6 775 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 ST13P5Q8NFI4 369 aaPredicted RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 KIAA1524Q8TCG1 905 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 RMDN1Q96DB5 314 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 PANX2Q96RD6 677 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 JPH2Q9BR39 696 aaPredicted RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 NAA15Q9BXJ9 866 aaKnown RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 KCTD10Q9H3F6 313 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 NDST4Q9H3R1 872 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 INTS13Q9NVM9 706 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 ZNHIT6Q9NWK9 470 aaKnown RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 ARMCX3Q9UH62 379 aaPredicted RBP11.02□□□□□ -0.65
SS18-210ENST00000578700 DUSP12Q9UNI6 340 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 FRMD4BQ9Y2L6 1034 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 FAN1Q9Y2M0 1017 aa11.02□□□□□ -0.65
SS18-210ENST00000578700 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.02□□□□□ -0.65
SS18-210ENST00000578700 CCDC195A0A1B0GUA6 201 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 MED19A0JLT2 244 aaPredicted RBP11.01□□□□□ -0.65
SS18-210ENST00000578700 TMEM150BA6NC51 233 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 CCDC169A6NNP5 214 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 STX10O60499 249 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 NR3C1P04150 777 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 ALDH2P05091 517 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 DCNP07585 359 aaKnown RBP11.01□□□□□ -0.65
SS18-210ENST00000578700 CNPP09543 421 aaKnown RBP11.01□□□□□ -0.65
SS18-210ENST00000578700 SKIP12755 728 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 TRIM21P19474 475 aaKnown RBP11.01□□□□□ -0.65
SS18-210ENST00000578700 PSMC2P35998 433 aaKnown RBP11.01□□□□□ -0.65
SS18-210ENST00000578700 PBX1P40424 430 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 CLCN4P51793 760 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 CASP5P51878 434 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 NPEPPSP55786 919 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 MARSP56192 900 aaKnown RBP11.01□□□□□ -0.65
SS18-210ENST00000578700 PEX3P56589 373 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 MYBPC2Q14324 1141 aa11.01□□□□□ -0.65
SS18-210ENST00000578700 NOLC1Q14978 699 aaKnown RBP eCLIP11.01□□□□□ -0.65
SS18-210ENST00000578700 PPP2R5AQ15172 486 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms