RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 ADAM2Q99965 735 aa6.83□□□□□ -1.32
NUP88-213ENST00000576862 PACSIN1Q9BY11 444 aa6.83□□□□□ -1.32
NUP88-213ENST00000576862 MAN1C1Q9NR34 630 aa6.83□□□□□ -1.32
NUP88-213ENST00000576862 HSFX1Q9UBD0 423 aa6.83□□□□□ -1.32
NUP88-213ENST00000576862 USP25Q9UHP3 1055 aa6.83□□□□□ -1.32
NUP88-213ENST00000576862 NOB1Q9ULX3 412 aaKnown RBP6.83□□□□□ -1.32
NUP88-213ENST00000576862 PRSS29PA6NIE9 313 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 AGFG2O95081 481 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 FSHBP01225 129 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 FCER1AP12319 257 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 MAKP20794 623 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 PRDX5P30044 214 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 GTF2H3Q13889 308 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 FAM102BQ5T8I3 360 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 CHPFQ8IZ52 775 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 TMEM132CQ8N3T6 1108 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 CPEB3Q8NE35 698 aaKnown RBP6.82□□□□□ -1.32
NUP88-213ENST00000576862 SLC35G2Q8TBE7 412 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 LARP4BQ92615 738 aaKnown RBP6.82□□□□□ -1.32
NUP88-213ENST00000576862 C1GALT1C1Q96EU7 318 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 TAAR9Q96RI9 348 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 TLR10Q9BXR5 811 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 REXO4Q9GZR2 422 aaKnown RBP6.82□□□□□ -1.32
NUP88-213ENST00000576862 RNPEPQ9H4A4 650 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 NMRK2Q9NPI5 230 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 SIDT1Q9NXL6 827 aaKnown RBP6.82□□□□□ -1.32
NUP88-213ENST00000576862 VSX1Q9NZR4 365 aaPredicted RBP6.82□□□□□ -1.32
NUP88-213ENST00000576862 KLHL42Q9P2K6 505 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 ABCF2Q9UG63 623 aa6.82□□□□□ -1.32
NUP88-213ENST00000576862 ARIH2O95376 493 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 SMARCA1P28370 1054 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 MCM7P33993 719 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 BMPR1AP36894 532 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 NKX6-1P78426 367 aaPredicted RBP6.81□□□□□ -1.32
NUP88-213ENST00000576862 HSD11B2P80365 405 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 ABHD18Q0P651 414 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 TIGD2Q4W5G0 525 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 CCDC93Q567U6 631 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 Q6ZPA2 131 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 SYNE4Q8N205 404 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 SLC16A11Q8NCK7 471 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 TMIEQ8NEW7 156 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 KLHL32Q96NJ5 620 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 CGRRF1Q99675 332 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 C1orf43Q9BWL3 253 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 KRTAP4-11Q9BYQ6 195 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 KMT5AQ9NQR1 393 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 NR2E3Q9Y5X4 410 aa6.81□□□□□ -1.32
NUP88-213ENST00000576862 TSPAN6O43657 245 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 FTH1P19P0C7X4 201 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 TYRP14679 529 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 HSPA6P17066 643 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 KLF10Q13118 480 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 RESTQ13127 1097 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 NXNQ6DKJ4 435 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 CXorf57Q6NSI4 855 aaKnown RBP6.8□□□□□ -1.32
NUP88-213ENST00000576862 ZNF627Q7L945 461 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 ARHGEF19Q8IW93 802 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 TCEAL8Q8IYN2 117 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 Q8NA96 180 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 PLBD2Q8NHP8 589 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 PROKR1Q8TCW9 393 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 ACO2Q99798 780 aaKnown RBP6.8□□□□□ -1.32
NUP88-213ENST00000576862 LMBRD1Q9NUN5 540 aa6.8□□□□□ -1.32
NUP88-213ENST00000576862 AKAP8O43823 692 aaKnown RBP6.79□□□□□ -1.32
NUP88-213ENST00000576862 ZFPL1O95159 310 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 ABHD16AO95870 558 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 GPANK1O95872 356 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 DDX6P26196 483 aaKnown RBP eCLIP6.79□□□□□ -1.32
NUP88-213ENST00000576862 GDF5P43026 501 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 PPP1R3BQ86XI6 285 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 PPP1R35Q8TAP8 253 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 TSR2Q969E8 191 aaKnown RBP6.79□□□□□ -1.32
NUP88-213ENST00000576862 NACC2Q96BF6 587 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 PNKPQ96T60 521 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 LRFN3Q9BTN0 628 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 MRPL46Q9H2W6 279 aaKnown RBP6.79□□□□□ -1.32
NUP88-213ENST00000576862 WDCPQ9H6R7 721 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 ANKFY1Q9P2R3 1169 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 ING1Q9UK53 422 aaPredicted RBP6.79□□□□□ -1.32
NUP88-213ENST00000576862 STXBP5LQ9Y2K9 1186 aa6.79□□□□□ -1.32
NUP88-213ENST00000576862 UNC119BA6NIH7 251 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 E9PLN8 166 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 PPFIA4O75335 1185 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 SPDEFO95238 335 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 ADH4P08319 380 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 PIK3CGP48736 1102 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 CXADRP78310 365 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 SCAPQ12770 1279 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 TP53BP2Q13625 1128 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 PLS1Q14651 629 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 LY6G5CQ5SRR4 150 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 KCNV1Q6PIU1 500 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 SH2D3CQ8N5H7 860 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 MAGEB6Q8N7X4 407 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 NEU4Q8WWR8 484 aaPredicted RBP6.78□□□□□ -1.32
NUP88-213ENST00000576862 RUNDC1Q96C34 613 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 FAM167AQ96KS9 214 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 VKORC1Q9BQB6 163 aa6.78□□□□□ -1.32
NUP88-213ENST00000576862 TMPRSS5Q9H3S3 457 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms