RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 TCP11X2Q5H9J9 407 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 TDRD10Q5VZ19 366 aaKnown RBP19.62■□□□□ 0.73
CCDC40-213ENST00000574933 TMEM173Q86WV6 379 aaPredicted RBP19.62■□□□□ 0.73
CCDC40-213ENST00000574933 RNF168Q8IYW5 571 aaPredicted RBP19.62■□□□□ 0.73
CCDC40-213ENST00000574933 TMEM130Q8N3G9 435 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 LRRC52Q8N7C0 313 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 KLHL23Q8NBE8 558 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 C3orf58Q8NDZ4 430 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 C11orf84Q9BUA3 381 aaPredicted RBP19.62■□□□□ 0.73
CCDC40-213ENST00000574933 STK39Q9UEW8 545 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 ADAM28Q9UKQ2 775 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 LZTS1Q9Y250 596 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 PRG3Q9Y2Y8 225 aaPredicted RBP19.62■□□□□ 0.73
CCDC40-213ENST00000574933 COQ4Q9Y3A0 265 aa19.62■□□□□ 0.73
CCDC40-213ENST00000574933 TRANK1O15050 2925 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 KCNJ18B7U540 433 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 NT5C1B-RDH14C9J2C7 533 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 H3BNC9 293 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 PPEF2O14830 753 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 P4HA2O15460 535 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 FGF18O76093 207 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 KIF4AO95239 1232 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 STAU1O95793 577 aaKnown RBP19.61■□□□□ 0.73
CCDC40-213ENST00000574933 ITGB3P05106 788 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 PRKCSHP14314 528 aaPredicted RBP19.61■□□□□ 0.73
CCDC40-213ENST00000574933 PNPLA4P41247 253 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 UBE3AQ05086 875 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 KCNJ12Q14500 433 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 KRT39Q6A163 491 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 DDX53Q86TM3 631 aaKnown RBP19.61■□□□□ 0.73
CCDC40-213ENST00000574933 FBXO22Q8NEZ5 403 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 BCL7CQ8WUZ0 217 aaPredicted RBP19.61■□□□□ 0.73
CCDC40-213ENST00000574933 ZNF560Q96MR9 790 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 ZNF576Q9H609 170 aa19.61■□□□□ 0.73
CCDC40-213ENST00000574933 MAGEC2Q9UBF1 373 aaPredicted RBP19.61■□□□□ 0.73
CCDC40-213ENST00000574933 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.61■□□□□ 0.73
CCDC40-213ENST00000574933 LRRC10BA6NIK2 292 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 F8W810 466 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 N4BP1O75113 896 aaKnown RBP19.6■□□□□ 0.73
CCDC40-213ENST00000574933 B3GAT3O94766 335 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 VNN1O95497 513 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 ITGB1P05556 798 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 IGFBP6P24592 240 aaPredicted RBP19.6■□□□□ 0.73
CCDC40-213ENST00000574933 POLR2BP30876 1174 aaKnown RBP19.6■□□□□ 0.73
CCDC40-213ENST00000574933 GCLMP48507 274 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 MXI1P50539 228 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 LILRA4P59901 499 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 KCNH2Q12809 1159 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 ELAVL2Q12926 359 aaKnown RBP19.6■□□□□ 0.73
CCDC40-213ENST00000574933 MAN2A1Q16706 1144 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 DCAF17Q5H9S7 520 aaPredicted RBP19.6■□□□□ 0.73
CCDC40-213ENST00000574933 TCERG1LQ5VWI1 586 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 SPPL3Q8TCT6 385 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 TMEM169Q96HH4 297 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 VRTNQ9H8Y1 702 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 LIMA1Q9UHB6 759 aaKnown RBP19.6■□□□□ 0.73
CCDC40-213ENST00000574933 AGAP1Q9UPQ3 857 aa19.6■□□□□ 0.73
CCDC40-213ENST00000574933 BECN2A8MW95 431 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 TADA2AO75478 443 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 CST3P01034 146 aaPredicted RBP19.59■□□□□ 0.73
CCDC40-213ENST00000574933 ATICP31939 592 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 MTIF2P46199 727 aaKnown RBP19.59■□□□□ 0.73
CCDC40-213ENST00000574933 FMO5P49326 533 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 TAF6P49848 677 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 KRT17Q04695 432 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 SCARA3Q6AZY7 606 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 FUT10Q6P4F1 479 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 RABGGTAQ92696 567 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 LRCH3Q96II8 777 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 SUSD3Q96L08 255 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 TUBGCP2Q9BSJ2 902 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 VN1R3Q9BXE9 311 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 XYLT2Q9H1B5 865 aa19.59■□□□□ 0.73
CCDC40-213ENST00000574933 TTYH1Q9H313 450 aaPredicted RBP19.59■□□□□ 0.73
CCDC40-213ENST00000574933 PRRC2BQ5JSZ5 2229 aaKnown RBP19.59■□□□□ 0.73
CCDC40-213ENST00000574933 MTCL1Q9Y4B5 1905 aaKnown RBP19.59■□□□□ 0.73
CCDC40-213ENST00000574933 SF3B1O75533 1304 aaKnown RBP eCLIP19.58■□□□□ 0.73
CCDC40-213ENST00000574933 M0QZQ0 153 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 TRAPPC3O43617 180 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 HLA-DRAP01903 254 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 AFPP02771 609 aaKnown RBP19.58■□□□□ 0.72
CCDC40-213ENST00000574933 BIRC3Q13489 604 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 NCOA4Q13772 614 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 KRT31Q15323 416 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 CBWD6Q4V339 395 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 CBWD3Q5JTY5 395 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 MIIPQ5JXC2 388 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 CBWD5Q5RIA9 395 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 LUZP1Q86V48 1076 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 GPR65Q8IYL9 337 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 FBXL13Q8NEE6 735 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 TAF4BQ92750 862 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 GPR62Q9BZJ7 368 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 LMAN2LQ9H0V9 348 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 GDAP2Q9NXN4 497 aa19.58■□□□□ 0.72
CCDC40-213ENST00000574933 GTPBP10A4D1E9 387 aaKnown RBP19.57■□□□□ 0.72
CCDC40-213ENST00000574933 EPOPA6NHQ4 379 aa19.57■□□□□ 0.72
CCDC40-213ENST00000574933 TULP1O00294 542 aaPredicted RBP19.57■□□□□ 0.72
CCDC40-213ENST00000574933 SPTLC1O15269 473 aa19.57■□□□□ 0.72
CCDC40-213ENST00000574933 PHACTR2O75167 634 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms