RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PNMA5Q96PV4 448 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 MAFFQ9ULX9 164 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 DCHS1Q96JQ0 3298 aa23.02■■□□□ 1.28
VPS53-216ENST00000574029 SHISA7A6NL88 538 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 ZNF197O14709 1029 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 MAPTP10636 758 aaKnown RBP23.01■■□□□ 1.27
VPS53-216ENST00000574029 TARSP26639 723 aaKnown RBP23.01■■□□□ 1.27
VPS53-216ENST00000574029 MCM4P33991 863 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 ATP2C1P98194 919 aaPredicted RBP23.01■■□□□ 1.27
VPS53-216ENST00000574029 SEZ6Q53EL9 994 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 ZNF280DQ6N043 979 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 SUMF1Q8NBK3 374 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 APPL2Q8NEU8 664 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 RUBCNQ92622 972 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 DNASE1L2Q92874 299 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 TCEAL4Q96EI5 215 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 TBC1D32Q96NH3 1257 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 ANKFY1Q9P2R3 1169 aa23.01■■□□□ 1.27
VPS53-216ENST00000574029 AFF4Q9UHB7 1163 aaKnown RBP23.01■■□□□ 1.27
VPS53-216ENST00000574029 COL4A2P08572 1712 aa23■■□□□ 1.27
VPS53-216ENST00000574029 KINO60870 393 aaKnown RBP23■■□□□ 1.27
VPS53-216ENST00000574029 CCR2P41597 374 aa23■■□□□ 1.27
VPS53-216ENST00000574029 RPS9P46781 194 aaKnown RBP23■■□□□ 1.27
VPS53-216ENST00000574029 SMTNP53814 917 aa23■■□□□ 1.27
VPS53-216ENST00000574029 MCL1Q07820 350 aa23■■□□□ 1.27
VPS53-216ENST00000574029 RAD51AP2Q09MP3 1159 aa23■■□□□ 1.27
VPS53-216ENST00000574029 RILPL1Q5EBL4 403 aa23■■□□□ 1.27
VPS53-216ENST00000574029 FAM78AQ5JUQ0 283 aa23■■□□□ 1.27
VPS53-216ENST00000574029 PDZD4Q76G19 769 aaPredicted RBP23■■□□□ 1.27
VPS53-216ENST00000574029 KIAA2013Q8IYS2 634 aa23■■□□□ 1.27
VPS53-216ENST00000574029 HEBP1Q9NRV9 189 aa23■■□□□ 1.27
VPS53-216ENST00000574029 TUBGCP4Q9UGJ1 667 aa23■■□□□ 1.27
VPS53-216ENST00000574029 PCDHB8Q9UN66 801 aa23■■□□□ 1.27
VPS53-216ENST00000574029 NRG2O14511 850 aaPredicted RBP22.99■■□□□ 1.27
VPS53-216ENST00000574029 NCAM2O15394 837 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 SLC12A3P55017 1021 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 ADCY1Q08828 1119 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 FZD5Q13467 585 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 ZRSR1Q15695 479 aaKnown RBP22.99■■□□□ 1.27
VPS53-216ENST00000574029 ZNF852Q6ZMS4 543 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 RMDN1Q96DB5 314 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 ASB16Q96NS5 453 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 HAPLN2Q9GZV7 340 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 PLEKHA5Q9HAU0 1116 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 ZFP14Q9HCL3 533 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 KCND2Q9NZV8 630 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 CEP72Q9P209 647 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 ZNF292O60281 2723 aa22.99■■□□□ 1.27
VPS53-216ENST00000574029 M0QZQ0 153 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 SPTLC1O15269 473 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 CLDN3O15551 220 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 EPHA5P54756 1037 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 CSTF1Q05048 431 aaKnown RBP22.98■■□□□ 1.27
VPS53-216ENST00000574029 CYP4A22Q5TCH4 519 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 IQCEQ6IPM2 695 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 ELMOD1Q8N336 334 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 KCNN1Q92952 543 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 ZNF512Q96ME7 567 aaPredicted RBP22.98■■□□□ 1.27
VPS53-216ENST00000574029 HINFPQ9BQA5 517 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 MRPS17Q9Y2R5 130 aaKnown RBP22.98■■□□□ 1.27
VPS53-216ENST00000574029 PCDHGA2Q9Y5H1 932 aa22.98■■□□□ 1.27
VPS53-216ENST00000574029 TTC26A0AVF1 554 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 MOSPD3O75425 235 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 PLA2G4BP0C869 781 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 CXCL8P10145 99 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 LRPAP1P30533 357 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 NCKAP1LP55160 1127 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 TWF1Q12792 350 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 GRM2Q14416 872 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 ZBTB6Q15916 424 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 RNF19BQ6ZMZ0 732 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 HS6ST3Q8IZP7 471 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 DCLK2Q8N568 766 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 LEMD2Q8NC56 503 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 ZBTB44Q8NCP5 570 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 NELL1Q92832 810 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 ZSWIM3Q96MP5 696 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 PLIN2Q99541 437 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 TRMT61BQ9BVS5 477 aaKnown RBP22.97■■□□□ 1.27
VPS53-216ENST00000574029 BRD9Q9H8M2 597 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 KIF3AQ9Y496 699 aa22.97■■□□□ 1.27
VPS53-216ENST00000574029 OAZ2O95190 189 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 CLTAP09496 248 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 CPB1P15086 417 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 CYP3A5P20815 502 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 MARCKSP29966 332 aaPredicted RBP22.96■■□□□ 1.27
VPS53-216ENST00000574029 SPAG1Q07617 926 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 TMEM119Q4V9L6 283 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 MCTP1Q6DN14 999 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 ZNF687Q8N1G0 1237 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 TMEM130Q8N3G9 435 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 BEST2Q8NFU1 509 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 SMARCD2Q92925 531 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 OXCT2Q9BYC2 517 aaPredicted RBP22.96■■□□□ 1.27
VPS53-216ENST00000574029 TRPV5Q9NQA5 729 aa22.96■■□□□ 1.27
VPS53-216ENST00000574029 LARSQ9P2J5 1176 aaKnown RBP22.96■■□□□ 1.27
VPS53-216ENST00000574029 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.96■■□□□ 1.27
VPS53-216ENST00000574029 VWA3AA6NCI4 1184 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 H0YCG3 227 aa22.95■■□□□ 1.26
VPS53-216ENST00000574029 MAN2B1O00754 1011 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms