RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CLCNKBP51801 687 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 TWF1Q12792 350 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 GRSF1Q12849 480 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS53-207ENST00000570510 ARHGAP29Q52LW3 1261 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 TPGS2Q68CL5 300 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 SLC8B1Q6J4K2 584 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 GPIHBP1Q8IV16 184 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 NOSTRINQ8IVI9 506 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 TRIM22Q8IYM9 498 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 ASAP3Q8TDY4 903 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 ZC3H10Q96K80 434 aaKnown RBP12.2□□□□□ -0.46
VPS53-207ENST00000570510 RNF26Q9BY78 433 aaPredicted RBP12.2□□□□□ -0.46
VPS53-207ENST00000570510 FOXD4L1Q9NU39 408 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 GTSE1Q9NYZ3 720 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 NUB1Q9Y5A7 615 aa12.2□□□□□ -0.46
VPS53-207ENST00000570510 TICRRQ7Z2Z1 1910 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 TMEM189-UBE2V1I3L0A0 370 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 TAF4O00268 1085 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 ARNTLO00327 626 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 NRG2O14511 850 aaPredicted RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 BAG4O95429 457 aaKnown RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 CSRP1P21291 193 aaKnown RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 BRCC3P46736 316 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 PRPF4BQ13523 1007 aaKnown RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 CCINQ13939 588 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 KARSQ15046 597 aaKnown RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 INF2Q27J81 1249 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 PLK5Q496M5 336 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 GLRA4Q5JXX5 417 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 TXNDC11Q6PKC3 985 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 MAEAQ7L5Y9 396 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 APBB1IPQ7Z5R6 666 aaPredicted RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 BLIDQ8IZY5 108 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 CAMKK1Q8N5S9 505 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 MKNK1Q9BUB5 465 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 POLR3FQ9H1D9 316 aaPredicted RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 XPNPEP1Q9NQW7 623 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 THG1LQ9NWX6 298 aaKnown RBP12.19□□□□□ -0.46
VPS53-207ENST00000570510 ANKFY1Q9P2R3 1169 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 VAV3Q9UKW4 847 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 IGF2RP11717 2491 aa12.19□□□□□ -0.46
VPS53-207ENST00000570510 NOTCH4Q99466 2003 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 CCDC194A0A1B0GVG4 234 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 A0A1W2PRU2 124 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 HYAL3O43820 417 aaPredicted RBP12.18□□□□□ -0.46
VPS53-207ENST00000570510 SLC37A4O43826 429 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 CCNT1O60563 726 aaKnown RBP12.18□□□□□ -0.46
VPS53-207ENST00000570510 SEC24AO95486 1093 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 CPB1P15086 417 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 GLRA2P23416 452 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 HOXC13P31276 330 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 ARL2P36404 184 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 YARSP54577 528 aaKnown RBP12.18□□□□□ -0.46
VPS53-207ENST00000570510 PLCB2Q00722 1185 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 FCHO2Q0JRZ9 810 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 MAPK6Q16659 721 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 CTXN3Q4LDR2 81 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 KRT25Q7Z3Z0 450 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 ARID3BQ8IVW6 561 aaPredicted RBP12.18□□□□□ -0.46
VPS53-207ENST00000570510 DEFB124Q8NES8 71 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 BRF1Q92994 677 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 ZFYVE19Q96K21 471 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 TMEM209Q96SK2 561 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 TMEM121BQ9BXQ6 578 aaPredicted RBP12.18□□□□□ -0.46
VPS53-207ENST00000570510 NEUROG3Q9Y4Z2 214 aa12.18□□□□□ -0.46
VPS53-207ENST00000570510 LNP1A1A4G5 178 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 BCLAF3A2AJT9 711 aaKnown RBP12.17□□□□□ -0.46
VPS53-207ENST00000570510 GCFC2P16383 781 aaKnown RBP12.17□□□□□ -0.46
VPS53-207ENST00000570510 MARCKSP29966 332 aaPredicted RBP12.17□□□□□ -0.46
VPS53-207ENST00000570510 EPHB3P54753 998 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 AMPD2Q01433 879 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 SSRP1Q08945 709 aaKnown RBP12.17□□□□□ -0.46
VPS53-207ENST00000570510 PLD1Q13393 1074 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 NAB2Q15742 525 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 UPP1Q16831 310 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 ITPRIPL2Q3MIP1 535 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 ARHGAP15Q53QZ3 475 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 ZNF280DQ6N043 979 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 C19orf48Q6RUI8 117 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 Q6ZUG5 572 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 SLFN12Q8IYM2 578 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 KCNB2Q92953 911 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 EXOC4Q96A65 974 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 HHIPQ96QV1 700 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 NAP1L4Q99733 375 aaKnown RBP12.17□□□□□ -0.46
VPS53-207ENST00000570510 DUSP15Q9H1R2 295 aaPredicted RBP12.17□□□□□ -0.46
VPS53-207ENST00000570510 C2orf40Q9H1Z8 148 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 PDZD7Q9H5P4 517 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 SLC38A7Q9NVC3 462 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 CEP72Q9P209 647 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 TPCN1Q9ULQ1 816 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 MAFFQ9ULX9 164 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 WASF3Q9UPY6 502 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 MSRB2Q9Y3D2 182 aa12.17□□□□□ -0.46
VPS53-207ENST00000570510 SYN3O14994 580 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 DCLK1O15075 740 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 USO1O60763 962 aaKnown RBP12.16□□□□□ -0.46
VPS53-207ENST00000570510 IFNAR1P17181 557 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 ALDH1A3P47895 512 aa12.16□□□□□ -0.46
VPS53-207ENST00000570510 CCT2P78371 535 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms