RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FAM200AQ8TCP9 573 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 TAS1R2Q8TE23 839 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 IGSF21Q96ID5 467 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 GPR62Q9BZJ7 368 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 SLC38A7Q9NVC3 462 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 LIMA1Q9UHB6 759 aaKnown RBP10.04□□□□□ -0.8
VPS35-211ENST00000569950 FRMD4BQ9Y2L6 1034 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 PRG3Q9Y2Y8 225 aaPredicted RBP10.04□□□□□ -0.8
VPS35-211ENST00000569950 NME7Q9Y5B8 376 aa10.04□□□□□ -0.8
VPS35-211ENST00000569950 KCNJ18B7U540 433 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 I3L4J1 428 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 RFXAPO00287 272 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 GRM6O15303 877 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 ITGB3P05106 788 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 LAG3P18627 525 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 POLR2BP30876 1174 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 RPL9P32969 192 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 BRCC3P46736 316 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 FMO5P49326 533 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 LILRA4P59901 499 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 MYL6P60660 151 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 PLCB3Q01970 1234 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 KCNJ12Q14500 433 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 DUOXA2Q1HG44 320 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 TIGD5Q53EQ6 642 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 SPPL3Q8TCT6 385 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 HASPINQ8TF76 798 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 TIFAQ96CG3 184 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 B3GALT6Q96L58 329 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 ZNF558Q96NG5 402 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 TGS1Q96RS0 853 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 RBSNQ9H1K0 784 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 TSPY26PQ9H489 355 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 VRTNQ9H8Y1 702 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 CERS4Q9HA82 394 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 APOBEC3GQ9HC16 384 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 METTL14Q9HCE5 456 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 TMEM8AQ9HCN3 771 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 ITGA11Q9UKX5 1188 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 PCDHGC5Q9Y5F6 944 aa10.03□□□□□ -0.8
VPS35-211ENST00000569950 MTCL1Q9Y4B5 1905 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 SPTBN5Q9NRC6 3674 aaKnown RBP10.03□□□□□ -0.8
VPS35-211ENST00000569950 XIRP2A4UGR9 3374 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 H3BNC9 293 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 M0QZQ0 153 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 FSCN2O14926 492 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 LILRB3O75022 631 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 FGF18O76093 207 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 STAU1O95793 577 aaKnown RBP10.02□□□□□ -0.81
VPS35-211ENST00000569950 GNA14O95837 355 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 ASS1P00966 412 aaKnown RBP10.02□□□□□ -0.81
VPS35-211ENST00000569950 HLA-DRAP01903 254 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 TNNI1P19237 187 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 EEF1GP26641 437 aaKnown RBP10.02□□□□□ -0.81
VPS35-211ENST00000569950 GTF2H1P32780 548 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 CTNNB1P35222 781 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 OR1G1P47890 313 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 FXR1P51114 621 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS35-211ENST00000569950 ERVFC1P60507 584 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 APBA1Q02410 837 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 RNASELQ05823 741 aaKnown RBP10.02□□□□□ -0.81
VPS35-211ENST00000569950 KCNMA1Q12791 1236 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 KCNH2Q12809 1159 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 CCDC40Q4G0X9 1142 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 RTP2Q5QGT7 225 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 PPP2R2DQ66LE6 453 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 SPOPLQ6IQ16 392 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 DCLRE1AQ6PJP8 1040 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 LRRC52Q8N7C0 313 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 UBR7Q8N806 425 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 BEST2Q8NFU1 509 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 SUSD3Q96L08 255 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 UROC1Q96N76 676 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 FNBP1Q96RU3 617 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 RTP3Q9BQQ7 232 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 TUBGCP2Q9BSJ2 902 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 PLVAPQ9BX97 442 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 SDCBP2Q9H190 292 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 ALG13Q9NP73 1137 aaKnown RBP10.02□□□□□ -0.81
VPS35-211ENST00000569950 SIX2Q9NPC8 291 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 CHST7Q9NS84 486 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 TAB2Q9NYJ8 693 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 MSRAQ9UJ68 235 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 ADAM28Q9UKQ2 775 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 MTUS1Q9ULD2 1270 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 AGAP1Q9UPQ3 857 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 FAN1Q9Y2M0 1017 aa10.02□□□□□ -0.81
VPS35-211ENST00000569950 C5orf42Q9H799 3197 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 DOCK6Q96HP0 2047 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 TBC1D4O60343 1298 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 CAVIN2O95810 425 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 ALDH2P05091 517 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 TMEM191BP0C7N4 346 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 KRT13P13646 458 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 FGFR3P22607 806 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 IRS1P35568 1242 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 MXI1P50539 228 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 COPB1P53618 953 aaKnown RBP10.01□□□□□ -0.81
VPS35-211ENST00000569950 AP3M2P53677 418 aa10.01□□□□□ -0.81
VPS35-211ENST00000569950 NCOA4Q13772 614 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms